Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00303X
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59320.1 68418.m07433 lipid transfer protein 3 (LTP3) identic...    32   0.22 
At5g59310.1 68418.m07432 lipid transfer protein 4 (LTP4) identic...    29   1.5  
At2g21185.1 68415.m02513 expressed protein                             29   2.0  
At3g51590.1 68416.m05652 lipid transfer protein, putative simila...    28   3.5  
At1g21240.1 68414.m02654 wall-associated kinase, putative simila...    28   4.6  
At1g12880.1 68414.m01496 MutT/nudix family protein similar to di...    27   6.1  
At3g43210.1 68416.m04561 kinesin motor family protein (NACK2) co...    27   8.1  

>At5g59320.1 68418.m07433 lipid transfer protein 3 (LTP3) identical
           to lipid transfer protein 3 from Arabidopsis thaliana
           [gi:8571921]; contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 115

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -3

Query: 462 VVAAVLLARSCGFMSTSFSM*PCSRRVTWSYVLPSSCCIGSHLYRSRLAEERTPRTTLAA 283
           +VA+V  A SCG ++ S +  PC+  ++   ++P SCC G     S +A+    R     
Sbjct: 17  IVASVDAAISCGTVAGSLA--PCATYLSKGGLVPPSCCAGVKTLNS-MAKTTPDRQQACR 73

Query: 282 CV 277
           C+
Sbjct: 74  CI 75


>At5g59310.1 68418.m07432 lipid transfer protein 4 (LTP4) identical
           to lipid transfer protein 4 from Arabidopsis thaliana
           [gi:8571923]; contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 112

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 462 VVAAVLLARSCGFMSTSFSM*PCSRRVTWSYVLPSSCCIG 343
           +VA+V  A +CG +++S S  PC   ++   V+P  CC G
Sbjct: 17  IVASVDAAITCGTVASSLS--PCLGYLSKGGVVPPPCCAG 54


>At2g21185.1 68415.m02513 expressed protein
          Length = 93

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 379 LVVRFTFLVLYRVASVQISTGRGEDSTNDVGCLCCPLSVTFSVRLASC 236
           + V    L L  V   +++   GED  + +     PL++ F+VR  SC
Sbjct: 24  ITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLFAVRCLSC 71


>At3g51590.1 68416.m05652 lipid transfer protein, putative similar
           to lipid transfer protein E2 precursor, Brassica napus,
           PIR:T07984 [GI:899224]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 119

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 432 CGFMSTSFSM*PCSRRVTWSYVLPSSCCIG-SHLYRSRLAEERTPRTTLAACVVL 271
           CG ++++ +   C   +T S  LPS CC+G   LY  +LA+    R  +  C+ L
Sbjct: 28  CGTVTSTLAQ--CLTYLTNSGPLPSQCCVGVKSLY--QLAQTTPDRKQVCECLKL 78


>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 741

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 168 SRPGLWCCKCRKSIDAGTSAMCTRP 94
           +R G + CKC    D  +S  CTRP
Sbjct: 312 NRDGGFDCKCPSGYDLNSSMSCTRP 336


>At1g12880.1 68414.m01496 MutT/nudix family protein similar to
           diphosphoinositol polyphosphate phosphohydrolase [Homo
           sapiens] GI:3978224; contains Pfam profile PF00293:
           NUDIX domain
          Length = 203

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 434 PAGSCPLRSRCSLAVDV*LGRTFYLPRVVSGRICTDL-DWPRRGLHERRWLPV 279
           P G    RS+ S   D  LG       + + ++  +L DWP R   ERRWL V
Sbjct: 96  PLGVWEFRSKSSTVEDECLGGC--KGYMFALKVTEELEDWPERKNRERRWLTV 146


>At3g43210.1 68416.m04561 kinesin motor family protein (NACK2)
           contains Pfam profile: PF00225 kinesin motor domain
          Length = 938

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 263 YGQRTTQAANVVRGVLSSASRDLYRCDPIQHEEGKTYDQVTRLLQGYIENEVDMNPQD 436
           YGQ ++     +RGV  S  +D+Y  + I+  + +++      L+ Y E  VD+  +D
Sbjct: 112 YGQTSSGKTFTMRGVTESVVKDIY--EHIRKTQERSFVLKVSALEIYNETVVDLLNRD 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,814,096
Number of Sequences: 28952
Number of extensions: 239477
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)