Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00299
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)           45   2e-05
SB_32685| Best HMM Match : RCSD (HMM E-Value=0.18)                     27   4.8  

>SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)
          Length = 175

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
 Frame = +1

Query: 22  SKLVGLRAATTSMMVSRNL-------AAAQKATDPIQQLFLDKIREYKXXSAGGKVPDAS 180
           S+L     +T S+++ RN+       A   K  DPIQ+LF++K+  YK  S GGK+ D++
Sbjct: 81  SRLAVASPSTCSIVLRRNIGTTYAAMAKMDKNADPIQRLFVEKLEAYKQKSKGGKLIDST 140

Query: 181 PAVXXXXXXXXXXXXXQYGG 240
           P +             +YGG
Sbjct: 141 PEMESEIEKEREQIRKRYGG 160


>SB_32685| Best HMM Match : RCSD (HMM E-Value=0.18)
          Length = 530

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 275 QRWECCHSIPGPPPY 231
           QRW+ C   P PPPY
Sbjct: 33  QRWKVCKREPKPPPY 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,964,317
Number of Sequences: 59808
Number of extensions: 214039
Number of successful extensions: 274
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)