Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00299
         (419 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r...    28   3.0  
At2g41260.2 68415.m05096 glycine-rich protein / late embryogenes...    27   5.2  
At2g41260.1 68415.m05095 glycine-rich protein / late embryogenes...    27   5.2  

>At3g54430.1 68416.m06021 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 183

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 171 RCQPCCRERAEN*IRKA*EAVW-RGSRNRMTAFPSLKFEEPKLDPIDEQAAP 323
           RC+ CC+ R  N +    ++ W   S  R ++ PS   E  K   ID+Q++P
Sbjct: 56  RCRTCCKSRGYNCVTHV-KSTWIPSSATRSSSSPS---ERKKKLKIDKQSSP 103


>At2g41260.2 68415.m05096 glycine-rich protein / late embryogenesis
           abundant protein (M17) identical to late-embryogenesis
           abundant M17 protein GI:3342551 from [Arabidopsis
           thaliana]
          Length = 280

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 156 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 85  GWWRGRCRYCCRSQAE 100



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 156 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 140 GWWRGRCRYCCRSQAE 155



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 156 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 195 GWWRGRCRYCCRSQAE 210



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 156 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 250 GWWRGRCRYCCRSQAE 265


>At2g41260.1 68415.m05095 glycine-rich protein / late embryogenesis
           abundant protein (M17) identical to late-embryogenesis
           abundant M17 protein GI:3342551 from [Arabidopsis
           thaliana]
          Length = 225

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 156 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 85  GWWRGRCRYCCRSQAE 100



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 156 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 140 GWWRGRCRYCCRSQAE 155



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 156 GWQSPRCQPCCRERAE 203
           GW   RC+ CCR +AE
Sbjct: 195 GWWRGRCRYCCRSQAE 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,511,789
Number of Sequences: 28952
Number of extensions: 159789
Number of successful extensions: 252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)