Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00297
         (743 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    74   4e-12
UniRef50_Q22W87 Cluster: Protein kinase domain containing protei...    34   3.2  
UniRef50_A4CM10 Cluster: Putative uncharacterized protein; n=1; ...    34   4.2  
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta...    34   4.2  
UniRef50_UPI00006CA699 Cluster: cyclic nucleotide-binding domain...    33   7.4  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 73.7 bits (173), Expect = 4e-12
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = +2

Query: 641  SRFYHRTARHRSRVHPYYMEPLRSSTVRFQRYFL 742
            SRFYHRTARHRSRVHPYY+EPLRSSTVRFQR FL
Sbjct: 902  SRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFL 935


>UniRef50_Q22W87 Cluster: Protein kinase domain containing protein;
           n=1; Tetrahymena thermophila SB210|Rep: Protein kinase
           domain containing protein - Tetrahymena thermophila
           SB210
          Length = 671

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 538 NKHTKCKNKEKRIIKMKNETLQFLDDVIGCML*DAQKADELIPNNTYLLC 389
           NK  +   K KR I+ + +  +FLD V   +   +QK   LIP + YL C
Sbjct: 463 NKQKELSQKAKRRIEFELQKAKFLDQVSILLKEQSQKYPSLIPKDIYLKC 512


>UniRef50_A4CM10 Cluster: Putative uncharacterized protein; n=1;
           Robiginitalea biformata HTCC2501|Rep: Putative
           uncharacterized protein - Robiginitalea biformata
           HTCC2501
          Length = 653

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 683 ELYSGGGRCDGKNEIYSYNISSVYVTDVISV*LDQFYANYGT 558
           E YSG G+CD  N   S N++  Y  D+++V ++    N  T
Sbjct: 453 EFYSGAGQCDTSNGYQSGNVTVAYSNDMVTVTINLLPGNVMT 494


>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
           putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
           protein L6e, putative - Plasmodium chabaudi
          Length = 241

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 15/41 (36%), Positives = 28/41 (68%)
 Frame = -2

Query: 577 FMQTTEPLKTLVYNKHTKCKNKEKRIIKMKNETLQFLDDVI 455
           F+Q+ E +   ++ K    K ++K+++K KNE+L F++DVI
Sbjct: 144 FIQSAERINDEIFIKSMDVKKRQKKLLKNKNESL-FMNDVI 183


>UniRef50_UPI00006CA699 Cluster: cyclic nucleotide-binding domain
            containing protein; n=1; Tetrahymena thermophila
            SB210|Rep: cyclic nucleotide-binding domain containing
            protein - Tetrahymena thermophila SB210
          Length = 2731

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 14/57 (24%), Positives = 35/57 (61%)
 Frame = -3

Query: 198  IPEISRNKQTERQTKIVKNVILVYVPYIYSYMHVVKRGYFNITNRHSNLIYMYRFYN 28
            +P+ S+N+Q++ +++ VK++I+++  YIY  + +    Y    + HS+  ++ +  N
Sbjct: 1975 LPQKSKNQQSQGKSR-VKDMIILHFSYIYKLVQIKDARYKYFLHPHSSASFILQIIN 2030


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,734,151
Number of Sequences: 1657284
Number of extensions: 13239381
Number of successful extensions: 31813
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31799
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)