Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00297
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.9  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   6.5  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   6.5  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   8.6  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = -3

Query: 252  SLYHQLPISESLIKIGPGIPEISRNKQTERQTKIVKNVILVYVPYIYSYMHVVKRGYFNI 73
            S + ++P +  +  IGP  P  S      ++TK+   V+L  +  I    + V +GY N+
Sbjct: 3021 SAFRKVPKNAKVSNIGPPFPNCS-TYILSKETKVP--VLLGGLGEICMGGNQVAKGYLNL 3077

Query: 72   TNRHSNLIYMYRFYND 25
              +     Y  R +ND
Sbjct: 3078 PEQTDAKFYFDRRFND 3093


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 139 NIFYNFCLSFCLFVPANLWNAWTDF-DETFTN 231
           N+F  FCL+F +     + N   DF DE F N
Sbjct: 870 NVFTKFCLNFDITAKVFIDNGLLDFLDEKFDN 901


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 156 KIVKNVILVYVPYIYSYMHVVKRGYFNI 73
           K VKNVI   V    + +H ++  +FNI
Sbjct: 264 KFVKNVIATVVTVPVAELHHIRNAFFNI 291


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 129 YVPY-IYSYMHVVKRGYFNITNRHSNL 52
           Y P+ +Y+++ + K+GY+  T  H N+
Sbjct: 295 YAPHAVYNFVQLAKQGYYRNTIFHRNI 321


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 243 HQLPISESLIKIGPGIPE 190
           H +P+ E ++ IGP  PE
Sbjct: 417 HGIPVQERIVNIGPNKPE 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,532
Number of Sequences: 5004
Number of extensions: 58819
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)