Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00297
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634...    31   1.3  
06_01_1123 + 9257674-9258126,9258205-9258972                           30   2.2  
10_01_0251 + 2641320-2643272                                           28   6.8  
03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032     28   6.8  
06_03_1172 - 28147957-28148274,28149362-28149877                       28   9.0  

>03_02_0199 -
           6347980-6348225,6348300-6348341,6348824-6348978,
           6349369-6349475,6349608-6349733,6349809-6349890,
           6350057-6350130,6351184-6352631,6353391-6353540,
           6353664-6353906,6354009-6354266,6355554-6356015
          Length = 1130

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 276 FTLRLHPRSDNNRG*HRGTQLSIIKFNVSKANEGGSLVHNKYVLFGISSSAFCASHSIHP 455
           F +R+ P   N    H GT+L   K N  + + G S+  N ++   +++   C  HS+  
Sbjct: 734 FKMRIPPLFKN----HNGTKLVFPKVNGDEMDNGVSVAGNGHLGCNLNNCTLCREHSLEN 789

Query: 456 MTSS 467
             SS
Sbjct: 790 HNSS 793


>06_01_1123 + 9257674-9258126,9258205-9258972
          Length = 406

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 130 HQNNIFYNFCLSFCLFVPANLWN 198
           H+N   YN C+ +CL  P ++WN
Sbjct: 372 HENVTLYNDCVHWCLPGPVDVWN 394


>10_01_0251 + 2641320-2643272
          Length = 650

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 695 CSMDELYSGGGRCDGKNEIYSYNI 624
           C MD LY   GR   K+++YS+ I
Sbjct: 196 CYMDPLYYQEGRLTSKSDVYSFGI 219


>03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032
          Length = 429

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 553 KTLVYNKHTKCKNKE-KRIIKMKNETLQFLD 464
           + L++  +TKCK K+ K ++  +N+ L+ +D
Sbjct: 296 QNLIHKMYTKCKKKQNKGVLSFRNDPLKHID 326


>06_03_1172 - 28147957-28148274,28149362-28149877
          Length = 277

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 740 KNTSGNALWMTAVAPCSMDELYSGGGRCDGKNEIYSYNISS 618
           +N +       A APCS +    GGG C  +  I   NI S
Sbjct: 101 ENAAAGLAAAAAAAPCSCNCACCGGGSCAARVHIQQQNIFS 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,530,487
Number of Sequences: 37544
Number of extensions: 348187
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)