Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00297
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   3.0  
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_28560| Best HMM Match : NHL (HMM E-Value=1.8e-14)                   28   9.2  

>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 369 NEGGSLVHNKYVLFGI-SSSAFCASHSIHPMTSSRN 473
           N G S  HN Y+LFGI + S  CA       T SR+
Sbjct: 154 NPGSSQSHNAYMLFGILTGSTLCAGLLFKKETLSRD 189


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 632  TNISRFYHRTARHRSRVHPYYMEPLRSSTVRFQRYF 739
            T ++R++ RT R+ +R+  YY    R  +   Q+Y+
Sbjct: 991  TKMTRYFTRTTRYHTRMSRYYTRMTRYLSRVLQKYY 1026


>SB_28560| Best HMM Match : NHL (HMM E-Value=1.8e-14)
          Length = 453

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 592 TLITSVTYTDEMLYEYISFLXXXXXXXXXXXXILHGATAVIHSAF 726
           TLITSV   + ML+EY+ +             ++ G+   +H  F
Sbjct: 108 TLITSVISLNRMLWEYMHYCEKGQDVLSDWPEVMIGSDRTVHPVF 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,020,216
Number of Sequences: 59808
Number of extensions: 430200
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)