Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00297
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27710.1 68417.m03983 cytochrome P450 family protein contains...    30   1.9  
At1g08230.1 68414.m00909 amino acid transporter family protein l...    27   9.9  

>At4g27710.1 68417.m03983 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 518

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -2

Query: 559 PLKTLVYNKHTKCKNKEKRII----KMKNETLQFLDDVIGCML*DAQKADE 419
           P    ++  H K KN  KRII    K K +T  + DD++G ML  A K++E
Sbjct: 257 PTNLKLWELHKKVKNSIKRIIDSRLKSKCKTYGYGDDLLGVML-TAAKSNE 306


>At1g08230.1 68414.m00909 amino acid transporter family protein low
           similarity to amino acid permease [Oryza sativa]
           GI:7415521; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 332

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 198 IPEISRNKQTERQTKIVKNVILVYVPYIYSYMHVVKRGYFNITNRHSNLIYMYRFYNDE 22
           IPEI        + K++K + + Y+  I ++  V   GY+    + + LI+   F N E
Sbjct: 122 IPEIQATISAPVKGKMMKGLCMCYLVVIMTFFTVAITGYWAFGKKANGLIFT-NFLNAE 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,510
Number of Sequences: 28952
Number of extensions: 292187
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)