Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00296
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    29   0.56 
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.7  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   3.0  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    27   3.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   3.9  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   6.9  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    26   6.9  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.1  

>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +2

Query: 596 GAVLDDLRRSISGNGCISLSENVDKRLEILGGFQI*LSLSSL 721
           G  +D+ ++ +S  G +SLSE V K++ +LGG  I L + S+
Sbjct: 196 GVTIDE-KKIVSSTGALSLSE-VPKKMTVLGGGIIGLEMGSV 235


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 612 SSRTAPVDLELQPPNVPSTSGN 547
           S+ + P D  L+PPN P+ +GN
Sbjct: 265 SNSSTPTDQTLRPPNPPAANGN 286


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 197 EKPQTLWY*AALKVSGMEYFHCSSHIKIFLIENSLVLKIEYHLFI*KKILGLVTRF 30
           E    LW+  + +   ++Y+H S  +    I NS+ L ++      KK+L L   F
Sbjct: 501 ESSNYLWFNYSHRSKEIDYYHMSGILMGIAIHNSINLDVQMPRAFYKKLLQLPLSF 556


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 522 LVQKFEHQYYQKYLARLVAGVLNRQELSLMTYAVLF 629
           L++KFE +YY+  L+R  A +    + S  T+A+ F
Sbjct: 154 LIEKFEPEYYRSSLSRENASLSPNFKASDKTFALAF 189


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +2

Query: 98  SFQLKRF*YERNSG---NIPFPILLVQPSTI 181
           SFQ KRF YE   G   NI FP  + +PSTI
Sbjct: 128 SFQRKRFIYEPEKGCFANITFP--MDEPSTI 156


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 140 FHCSSHIKIFLIEN-SLVLKIEYHLFI*KKIL 48
           FHCSS ++I  + N S+ +K E+ +   + +L
Sbjct: 381 FHCSSDVRILQVVNESMPIKSEFFILTTESVL 412


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 415 HKYPSYQNMVQYNLWQEDHHDLAFPILCWTVFFHP 519
           H+Y  Y N   YN+    HH L  P     ++ HP
Sbjct: 149 HRYLHY-NKKLYNMIHAHHHRLQVPYAMGALYNHP 182


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 687 PRISRRLSTFSDSDIHPLPEIERR 616
           P +S RLS +S  +  P+PE + R
Sbjct: 49  PNLSNRLSPYSHRNYLPIPEADSR 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,911
Number of Sequences: 5004
Number of extensions: 80257
Number of successful extensions: 230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)