Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00296
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0209 - 1788630-1788863,1790289-1790435                           32   0.58 
08_02_1025 - 23737339-23737572,23739027-23739092,23739184-23739330     30   1.8  
09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545...    30   2.3  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   3.1  
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43...    28   9.5  
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073...    28   9.5  
01_05_0697 + 24372233-24372328,24372523-24372554,24372871-243729...    28   9.5  

>01_01_0209 - 1788630-1788863,1790289-1790435
          Length = 126

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/35 (42%), Positives = 25/35 (71%)
 Frame = +2

Query: 581 SSKSTGAVLDDLRRSISGNGCISLSENVDKRLEIL 685
           S+ S   ++ +L+R+   +G  SL+ENVD+R+EIL
Sbjct: 52  SADSLLKLVSELKRTAIFSGLASLTENVDRRIEIL 86


>08_02_1025 - 23737339-23737572,23739027-23739092,23739184-23739330
          Length = 148

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +2

Query: 581 SSKSTGAVLDDLRRSISGNGCISLSENVDKRLEI 682
           S+ S   ++ +L+R+   +G  SL+ENVD+R+EI
Sbjct: 74  SADSLLKLVSELKRTAIFSGLASLTENVDRRIEI 107


>09_04_0175 - 15353903-15354005,15354189-15354280,15354408-15354553,
            15354661-15354814,15354885-15354985,15355055-15355145,
            15355146-15355378,15355501-15355736,15355839-15356066,
            15356150-15356370,15356869-15356990,15357125-15357451,
            15357616-15357754,15357822-15357901,15358478-15358678,
            15359431-15359757,15360144-15360897
          Length = 1184

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 621  RRRSSRTAPVDLELQPPNVPSTSGNTDAQISEQE 520
            R+RS R+   +LELQP  +   +G+ D Q++E +
Sbjct: 1149 RKRSPRSRRQELELQPLTMSRNNGDQDDQLAEHK 1182


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -2

Query: 642  HPLPEI-ERRRSSRTAPVDLE----LQPPNVPSTSGNTDAQISEQEWMEENS 502
            HP  +  E  R S  +PV LE     QP   PSTSG   ++  EQE M  ++
Sbjct: 2057 HPAQQSPETSRHSIASPVGLEATQEFQPEMQPSTSGQDQSEELEQEGMSSSA 2108


>12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-439842,
            440233-440355,440439-440543,440656-441332,441498-441604,
            441970-442177,442178-442245,444209-444411,444580-444663,
            444780-445109,445238-445438,445667-445744,446236-446306
          Length = 969

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = -2

Query: 744  RLLVTQVPSDDNDSQIWNPPRISRRLSTFSDSDIHPLPEIERRRSSRTAPVDLELQPPNV 565
            R L+T +   D +S+    PR+ + +     ++  P+P+ ERR+       + E +P   
Sbjct: 887  RALLTALRCIDLNSE--KRPRMDQVVRMLDSNE--PIPQEERRQRQNHISNNSETEPLRG 942

Query: 564  PSTSGNTDAQISE 526
             S+SG +DA  +E
Sbjct: 943  KSSSGKSDAPENE 955


>07_03_1343 -
           25905475-25905678,25907025-25907167,25907273-25907366,
           25907526-25907687,25907884-25907952,25908631-25908843,
           25909054-25909113,25909294-25909382,25909745-25910063
          Length = 450

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 678 SRRLSTFSDSDIHPLPEIERRRSS-RTAPVDLE 583
           +R +  + D  +HP+  IERR+SS  ++P D E
Sbjct: 67  TRVMCRWRDQKLHPVKVIERRKSSTSSSPADYE 99


>01_05_0697 +
           24372233-24372328,24372523-24372554,24372871-24372971,
           24373050-24373122,24373267-24373298,24373482-24373651,
           24374029-24374127,24375460-24375855
          Length = 332

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -2

Query: 702 QIWNPPRISRRLSTFSDSDIHPLPEIERRRSSRTAPVDLELQPPNVPSTSGNTDAQISEQ 523
           Q+ N    ++  S F +  ++ L     + +S+ APV L+L PP  PS    TD+ I+  
Sbjct: 198 QLKNKESGAKIKSAFFEQGLNKL-SFNEKANSKEAPVSLKLPPP-PPSPVSPTDSGIAAS 255

Query: 522 EWMEE 508
            +  E
Sbjct: 256 PFKAE 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,628,725
Number of Sequences: 37544
Number of extensions: 479645
Number of successful extensions: 1183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)