Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00296
(775 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51842| Best HMM Match : YTH (HMM E-Value=1.8) 52 5e-07
SB_59353| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_1285| Best HMM Match : SET (HMM E-Value=0.011) 39 0.005
SB_42189| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.048
SB_30693| Best HMM Match : Protamine_P1 (HMM E-Value=6.3) 36 0.048
SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1) 34 0.11
SB_43915| Best HMM Match : Bombesin (HMM E-Value=4.9) 34 0.11
SB_50051| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_52495| Best HMM Match : AT_hook (HMM E-Value=4.6) 33 0.34
SB_31608| Best HMM Match : DUF298 (HMM E-Value=3.9) 33 0.34
SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_51752| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_45392| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_19874| Best HMM Match : CBM_X (HMM E-Value=2.2) 31 1.0
SB_51971| Best HMM Match : rve (HMM E-Value=7.7e-31) 31 1.4
SB_26234| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.8
SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39) 29 4.2
SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11) 29 5.5
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 29 5.5
SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11) 28 9.6
SB_16125| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_7524| Best HMM Match : V-ATPase_G (HMM E-Value=3.2) 28 9.6
>SB_51842| Best HMM Match : YTH (HMM E-Value=1.8)
Length = 244
Score = 52.0 bits (119), Expect = 5e-07
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 18/125 (14%)
Frame = -1
Query: 517 DGRKQSNIKWE-MPSHDDPLAIDYTVPCSGMKDIYVGLANANPIDYYDLFLTPNILEYIT 341
+G + +I+ E + + P++I P G K++ N +P+ +++LF P ++E I
Sbjct: 37 EGHESEDIEDENLVINSSPISIPDFTPRCGPKNLP---GNLSPLSFFELFFNPEVIELIV 93
Query: 340 EQTNLYATQCILPSDSSAG---SRNHLW-------TPVTL----ALVG---WMGLVKLPS 212
+TN Y QC G +++ W P+T+ A +G MG+VKLPS
Sbjct: 94 TETNKYVVQCNPDEFDDEGRKKAKDRDWFDKEGNIKPLTVEELKAFLGITIMMGIVKLPS 153
Query: 211 IKDYW 197
+KDYW
Sbjct: 154 MKDYW 158
>SB_59353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 560
Score = 42.3 bits (95), Expect = 4e-04
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = -1
Query: 517 DGRKQSNIKWEMPSHDD-PLAI-DYTVPCSGMKDIYVGLANANPIDYYDLFLTPNILEYI 344
+G + +I+ E+ S + P++I D+T C G K++ N +P+ +++LF ++E I
Sbjct: 37 EGHESEDIEDEIWSRNSSPISILDFTPRC-GPKNLP---GNLSPLSFFELFFNSEVIELI 92
Query: 343 TEQTNLYATQCILPSDSSAGSRNHLWTPVTLAL 245
+TN YA QC P + R L T + + L
Sbjct: 93 VTETNKYAVQC-NPDEFDDEGRRKLRTRIDVKL 124
>SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Frame = -1
Query: 403 NANPIDYYDLFLTPNILEYITEQTNLYATQCILPSDSSAG---SRNHLW-------TPVT 254
N +P+ +++LF ++E I +TN+YA QC G +++ W P+T
Sbjct: 54 NLSPLSFFELFFKSEVIELIVTETNMYAVQCNTDEFDEEGRKKAKDANWFDKEGNIKPLT 113
Query: 253 L-ALVGWMGLVKLPSIKDYWRNHKLYGTRLH*KYREW 146
+ L ++G+ + I D H+ Y T ++ +W
Sbjct: 114 VEELKAFLGITIMMGIVDLSDQHRSYYTVSSRRHMKW 150
>SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Frame = -1
Query: 406 ANANPIDYYDLFLTPNILEYITEQTNLYATQCILPSDSSAGSRNHLWTPVT-------LA 248
A +D++ LF T ++++ I+ TN YA I S A W +A
Sbjct: 161 AMTRAVDFFQLFFTAHLVQQISANTNAYAYANIQQKQSYANEMG-AWNDTNPEEINRLIA 219
Query: 247 LVGWMGLVKLPSIKDYWRNHKLY 179
L+ + GLV + S YW LY
Sbjct: 220 LILYCGLVNVSSFHRYWNTKTLY 242
>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1924
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 403 NANPIDYYDLFLTPNILEYITEQTNLYATQ 314
N + + Y+++F TP ++E I +QTNLYA Q
Sbjct: 1502 NDSELGYFEVFFTPELMEIIVDQTNLYAAQ 1531
>SB_1285| Best HMM Match : SET (HMM E-Value=0.011)
Length = 829
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Frame = -1
Query: 406 ANANPIDYYDLFLTPNILEYITEQTNLYATQCILPSDSSAGSRNHLWTPVT-------LA 248
A +D++ LF T ++++ I+ TN YA I S A W +A
Sbjct: 161 AMTRAVDFFQLFFTAHLVQQISANTNAYAYANIEQKQSYANEMG-AWNDTNPEEINRLIA 219
Query: 247 LVGWMGLVKLPSIKDYWRNHKLY 179
L+ + GLV + S YW LY
Sbjct: 220 LILYCGLVNVSSFHRYWNTKTLY 242
>SB_42189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 35.9 bits (79), Expect = 0.036
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = -1
Query: 403 NANPIDYYDLFLTPNILEYITEQTNLYATQCILPSDSSAGSRNHLWTPVT-------LAL 245
+A DY+ L + ++ I+++TN YA Q I+ + +R W VT L +
Sbjct: 126 DAKAEDYFSLMFSDELIGLISDETNRYA-QFIIGQKADREARLAKWKDVTPDELRMFLGV 184
Query: 244 VGWMGLVKLPSIKDYWRNHKLYG 176
MG+ LP YW + L+G
Sbjct: 185 ALVMGINSLPQQALYWSQNPLFG 207
>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 35.9 bits (79), Expect = 0.036
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = -1
Query: 403 NANPIDYYDLFLTPNILEYITEQTNLYATQCILPSDSSAGSRNHLWTPVT-------LAL 245
+A DY+ L + ++ I+++TN YA Q I+ + +R W VT L +
Sbjct: 1870 DAKAEDYFSLMFSDELIGLISDETNRYA-QFIIGQKADREARLAKWKDVTPDELRMFLGV 1928
Query: 244 VGWMGLVKLPSIKDYWRNHKLYG 176
MG+ LP YW + L+G
Sbjct: 1929 ALVMGINSLPQQALYWSQNPLFG 1951
>SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 35.5 bits (78), Expect = 0.048
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = -1
Query: 403 NANPIDYYDLFLTPNILEYITEQTNLYATQCILPSDSSAGSRNHLWTPVT-------LAL 245
+A DY+ L + ++ I+++TN YA Q ++ + +R W VT L +
Sbjct: 88 DAKAEDYFSLMFSDELIGLISDETNRYA-QFVIGQKADREARLAKWKDVTPDELRMFLGV 146
Query: 244 VGWMGLVKLPSIKDYWRNHKLYG 176
MG+ LP YW + L+G
Sbjct: 147 ALVMGINSLPQQALYWSQNPLFG 169
>SB_30693| Best HMM Match : Protamine_P1 (HMM E-Value=6.3)
Length = 250
Score = 35.5 bits (78), Expect = 0.048
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Frame = -1
Query: 415 VGLANA------NPIDYYDLFLTPNILEYITEQTNLYATQCILPSDSSAGSRNHLWTPVT 254
VGLAN + ++Y++LF + + + TNL A + + G+ W P+T
Sbjct: 103 VGLANRGQRREKSALEYFELFFDQEVWDCLVTMTNLNAER-----KGAKGTSGGQWKPIT 157
Query: 253 L----ALVGW---MGLVKLPSIKDYWR 194
A G MG+VKLP K YW+
Sbjct: 158 QDEMKAFFGLNIAMGIVKLPEAKMYWQ 184
>SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1)
Length = 567
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = -1
Query: 403 NANPIDYYDLFLTPNILEYITEQTNLYATQCILPSDSSAGSRNHLWTPVT-------LAL 245
+A DY+ L + ++ I+++TN YA + I+ + +R W VT L +
Sbjct: 88 DAKAEDYFSLMFSDELIGLISDETNRYA-RFIIGQKADREARLAKWKDVTPDELRMFLGV 146
Query: 244 VGWMGLVKLPSIKDYWRNHKLYG 176
MG+ LP YW + L+G
Sbjct: 147 ALVMGINSLPQQALYWSQNPLFG 169
>SB_43915| Best HMM Match : Bombesin (HMM E-Value=4.9)
Length = 485
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 406 ANANPIDYYDLFLTPNILEYITEQTNLYATQCILPSDSSAGSR-NHLWTPVTLALVGWMG 230
A AN D+ + P++++ I E+TN A Q +D + N + LA+ G
Sbjct: 276 AEANATDFLEQLFPPDLIDLIVEETNRNARQ--KDADPTYWEPVNASDIKIYLAIRLLQG 333
Query: 229 LVKLPSIKDYWRNHKLYGTR 170
+ +PS +DYW G +
Sbjct: 334 IKSVPSERDYWATSPFLGVK 353
>SB_50051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = -1
Query: 403 NANPIDYYDLFLTPNILEYITEQTNLYATQCILPSDSSAGSRNHLWTPVT-------LAL 245
+A DY+ L + ++ I+++TN YA Q I+ + +R W VT L +
Sbjct: 88 DAKAEDYFSLMFSDELIGLISDKTNRYA-QFIIGQKADREARLAKWKDVTPDELRMFLGV 146
Query: 244 VGWMGLVKLPSIKDYWRNHKLYG 176
+G+ LP YW + L+G
Sbjct: 147 ALVIGINSLPQQALYWSQNPLFG 169
>SB_52495| Best HMM Match : AT_hook (HMM E-Value=4.6)
Length = 183
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -1
Query: 253 LALVGWMGLVKLPSIKDYW 197
L +V MG+VKLPS++DYW
Sbjct: 47 LGIVIMMGIVKLPSVRDYW 65
>SB_31608| Best HMM Match : DUF298 (HMM E-Value=3.9)
Length = 203
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -1
Query: 253 LALVGWMGLVKLPSIKDYW 197
L +V MG+VKLPS++DYW
Sbjct: 67 LGIVIMMGIVKLPSVRDYW 85
>SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -1
Query: 253 LALVGWMGLVKLPSIKDYW 197
L +V MG+VKLPS++DYW
Sbjct: 412 LGIVIMMGIVKLPSVRDYW 430
>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1087
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2
Query: 651 SDIHPLPEIERRRSSRTAPVDLELQPPNVPSTSGNTDAQISEQEWMEENSP 499
SD+ P + RR S +++ P PS++ N+D + ++QEW E SP
Sbjct: 686 SDLRGDPRYDSRRRS-------DVRSPERPSSARNSDTKATDQEWKEVRSP 729
>SB_51752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -1
Query: 253 LALVGWMGLVKLPSIKDYW 197
L +V MG+VKLPS++DYW
Sbjct: 47 LGIVIMMGIVKLPSVRDYW 65
>SB_45392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 31.5 bits (68), Expect = 0.78
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = -1
Query: 517 DGRKQSNI-KWEMPSHDDP---LAIDYTVPCSGMKDIYVGL---ANANPIDYYDLFLTPN 359
DG + S++ W +PSH A++ G+ + V L A +D++ LF T +
Sbjct: 43 DGEEASSVGSWLLPSHSKQPPTTAMEMLTKIPGLL-LEVPLLRGAMTRAVDFFQLFFTAH 101
Query: 358 ILEYITEQTNLYA 320
+++ I+ TN YA
Sbjct: 102 LVQQISANTNAYA 114
>SB_19874| Best HMM Match : CBM_X (HMM E-Value=2.2)
Length = 725
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -1
Query: 406 ANANPIDYYDLFLTPNILEYITEQTNLYATQCI-LPSDSS--AGSRNHLWTPVTLALVGW 236
A A +D++ L T IL I +TN A Q + + SD A +++ L + +
Sbjct: 92 AEAGALDFFKLLFTDEILGEIVLETNRNAAQKMRIASDPKWYATTKDELCAYFGIRFL-- 149
Query: 235 MGLVKLPSIKDYWRNHKLYGTR 170
G++ +PS + YW ++ +
Sbjct: 150 QGIISVPSERHYWSKNEFLSVK 171
>SB_51971| Best HMM Match : rve (HMM E-Value=7.7e-31)
Length = 488
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 654 DSDIHPLPEIERRRSSRTAPVDLELQPPNVPST 556
+ ++ PLPE+ + S P PP+VPST
Sbjct: 438 EPEVTPLPEVSPKSSETVVPTCTTESPPDVPST 470
>SB_26234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 30.3 bits (65), Expect = 1.8
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Frame = -1
Query: 517 DGRKQSNIKWEMPSHDD-PLAIDYTVPCSGMKDIYVGLANANPIDYYDLFLTPNILEYIT 341
+G +I+ E+ S + P++I P G K++ N +P+ + ++E I
Sbjct: 37 EGHDSEDIEDEIWSRNSLPISIPDFTPRCGPKNLP---GNLSPL------FSLKVIELIV 87
Query: 340 EQTNLYATQCILPSDSSAGSR-----NHL-----WTPVT-------LALVGWMGLVKLPS 212
+TN YA QC G + N L P+T L + MG+VKLPS
Sbjct: 88 TETNKYAVQCNPDKFDDEGRKKAKDVNCLDKEGNIKPLTVEELKTFLGITIMMGIVKLPS 147
Query: 211 IKDYW 197
KDYW
Sbjct: 148 KKDYW 152
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/84 (28%), Positives = 38/84 (45%)
Frame = -1
Query: 280 RNHLWTPVTLALVGWMGLVKLPSIKDYWRNHKLYGTRLH*KYREWNISTVPLILKSF*LK 101
R +L + + V W+ K + + K TRLH W + +ILKSF L
Sbjct: 74 RQNLSVAICQSSVRWLCAFK--RVCRFVSTDKADKTRLH-VCAIWRQTARVVILKSFTLA 130
Query: 100 TPWF*KSNTIYLFKKRFSVLSRGF 29
PW ++ ++ + FS +RGF
Sbjct: 131 LPWRPEAPRVFQANRDFSSETRGF 154
>SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39)
Length = 1311
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 654 DSDIHPLPEIERRRSSRTAPVDLELQPPNVPST 556
+ ++ PLPE+ + S AP PP+V ST
Sbjct: 1125 EPEVTPLPEVSPKSSETVAPTCTTESPPDVAST 1157
>SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 253 LALVGWMGLVKLPSIKDYW 197
L++ MG+VK PS+KDYW
Sbjct: 150 LSITIMMGIVKPPSMKDYW 168
>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 660 FSDSDIHPLPEIERRRSSRTAPVDLELQPPNVPSTSGNTDAQ 535
F+D L +E+++S + A + +P N PST T Q
Sbjct: 534 FADDPFSGLSNVEQKKSDKLARSKRQQKPVNKPSTEAGTKTQ 575
>SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11)
Length = 862
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -1
Query: 508 KQSNIKWEMPSHDDPLAI-DYTV--PCSG 431
K +KW +PS DPLA+ DY V CSG
Sbjct: 284 KTLKLKWAVPSSVDPLAVKDYLVSWTCSG 312
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -2
Query: 687 PRISRRLSTFSD-SDIHPLPEIER-RRSSRTAPVDLELQPPNVPS-TSGNTDAQISEQEW 517
PR STF D S + P E R S+R PN S S +T+ I+EQ+
Sbjct: 200 PRSPMSPSTFVDLSQVMPSMEAGMTRNSARMRNESGRFSNPNTNSGNSSDTEEPITEQQG 259
Query: 516 MEENSPT*NGK 484
EN + NG+
Sbjct: 260 STENQTSNNGR 270
>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1074
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/67 (26%), Positives = 36/67 (53%)
Frame = -2
Query: 705 SQIWNPPRISRRLSTFSDSDIHPLPEIERRRSSRTAPVDLELQPPNVPSTSGNTDAQISE 526
S I PP+++ ++ T +S + L +R SS + L+ PP+VP S + +IS
Sbjct: 852 SAIAKPPQLTSKIQT-PNSYLGTLSTATKRASSISTKT-LKRTPPSVPVRSSSRATKISY 909
Query: 525 QEWMEEN 505
+ +++ +
Sbjct: 910 KAYLQSD 916
>SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 758
Score = 27.9 bits (59), Expect = 9.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 695 GTLLGFQGVCQHFRIVIYIHC 633
G ++GF GVC + + +Y++C
Sbjct: 728 GRIMGFLGVCSIYYVFMYVNC 748
>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2978
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 240 PTRAKVTGVHRWFLDPAEESEG 305
PTR G+ W LDPA+ + G
Sbjct: 2831 PTRVAFVGISNWSLDPAKMNRG 2852
>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
Length = 1170
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = -1
Query: 358 ILEYITEQTNLYATQCILPSDSSAGSRNHLWTPVT-------LALVGWMGLVKLPSIKDY 200
++ I+++TN YA Q I+ ++ +R W VT L + MG+ LP Y
Sbjct: 6 LIGLISDETNRYA-QFIIGQKANREARLAKWKDVTPDELRMFLGVALVMGINSLPQQALY 64
Query: 199 WRNHKLYG 176
W + L+G
Sbjct: 65 WSQNPLFG 72
>SB_16125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 578 WSSKSTGAVLDDLRRSISGNGC-ISLSENVDKRLEILGGF 694
++S+ + V+DD+ +S NGC + L ++++ ++L GF
Sbjct: 119 FTSRFSLDVIDDVSLQLSHNGCYLDLENTLEEQADLLEGF 158
>SB_7524| Best HMM Match : V-ATPase_G (HMM E-Value=3.2)
Length = 492
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -1
Query: 406 ANANPIDYYDLFLTPNILEYITEQTNLYATQ-CILPSDSS--AGSRNHLWTPVTLALVGW 236
A A +D++ L T I E I +TN A Q + SD A +++ L + +
Sbjct: 280 AEAGALDFFKLLFTDEIPEEIVLETNRNAAQKTRIVSDPKWYATTKDELCAYFGIRFL-- 337
Query: 235 MGLVKLPSIKDYWRNHKLYGTR 170
G+ +PS + YW ++ +
Sbjct: 338 QGIKSVPSERHYWSKNEFLSVK 359
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,152,621
Number of Sequences: 59808
Number of extensions: 558436
Number of successful extensions: 1194
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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