Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00296
(775 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC130441-1|AAI30442.1| 585|Homo sapiens piggyBac transposable e... 34 0.65
AK057200-1|BAB71379.1| 581|Homo sapiens DR1) mRNA. protein. 34 0.65
AL691479-1|CAI13996.2| 409|Homo sapiens piggyBac transposable e... 32 2.6
AK126781-1|BAC86688.1| 179|Homo sapiens protein ( Homo sapiens ... 32 2.6
X65024-1|CAA46158.1| 823|Homo sapiens Xeroderma Pigmentosum Gro... 30 8.0
D21089-1|BAA04651.1| 940|Homo sapiens XP-C repair complementing... 30 8.0
BC016620-1|AAH16620.1| 940|Homo sapiens xeroderma pigmentosum, ... 30 8.0
AY131066-1|AAM77801.1| 940|Homo sapiens xeroderma pigmentosum, ... 30 8.0
AK222844-1|BAD96564.1| 872|Homo sapiens xeroderma pigmentosum, ... 30 8.0
AF261901-1|AAF87574.1| 940|Homo sapiens xeroderma pigmentosum g... 30 8.0
>BC130441-1|AAI30442.1| 585|Homo sapiens piggyBac transposable
element derived 4 protein.
Length = 585
Score = 33.9 bits (74), Expect = 0.65
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = -1
Query: 397 NPIDYYDLFLTPNILEYITEQTNLYAT-QCILPSDSSAGSRNHLW-------TPVTLALV 242
+P+ Y++LF T ++ IT +TN A P SR W V A++
Sbjct: 103 DPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMDKWKDTDNDELKVFFAVM 162
Query: 241 GWMGLVKLPSIKDYWRNHKLYGT 173
G+V+ P ++ +W L T
Sbjct: 163 LLQGIVQKPELEMFWSTRPLLDT 185
>AK057200-1|BAB71379.1| 581|Homo sapiens DR1) mRNA. protein.
Length = 581
Score = 33.9 bits (74), Expect = 0.65
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = -1
Query: 397 NPIDYYDLFLTPNILEYITEQTNLYAT-QCILPSDSSAGSRNHLW-------TPVTLALV 242
+P+ Y++LF T ++ IT +TN A P SR W V A++
Sbjct: 103 DPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMDKWKDTDNDELKVFFAVM 162
Query: 241 GWMGLVKLPSIKDYWRNHKLYGT 173
G+V+ P ++ +W L T
Sbjct: 163 LLQGIVQKPELEMFWSTRPLLDT 185
>AL691479-1|CAI13996.2| 409|Homo sapiens piggyBac transposable
element derived 5 protein.
Length = 409
Score = 31.9 bits (69), Expect = 2.6
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -1
Query: 403 NANPIDYYDLFLTPNILEYITEQTNLYA 320
+A+ +D++ LF+ N+L+ + QTN+YA
Sbjct: 4 SASAVDFFQLFVPDNVLKNMVVQTNMYA 31
>AK126781-1|BAC86688.1| 179|Homo sapiens protein ( Homo sapiens
cDNA FLJ44830 fis, clone BRACE3047018. ).
Length = 179
Score = 31.9 bits (69), Expect = 2.6
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +2
Query: 506 FSSIHSCSEI*ASVLPEVLGTFGGWSSKSTGAVLDDLR--RSISGNGCISLSENVDKRLE 679
FSSIH EI SV P+V G FGG K+ + + S GC+ + LE
Sbjct: 37 FSSIHENKEI--SVSPQVRGPFGGQMVKTRACMGLSMAWGSCCSPGGCLPRQGKLRSPLE 94
Query: 680 ILG-GFQI*LSLSSLGTCVTKSLHR 751
+ G LS SSL C + H+
Sbjct: 95 LQGHQAHGPLSDSSLSVCKRGTCHQ 119
>X65024-1|CAA46158.1| 823|Homo sapiens Xeroderma Pigmentosum Group
C Complementing factor protein.
Length = 823
Score = 30.3 bits (65), Expect = 8.0
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 490 WEMPSHDDPLAIDYTVPCSGMKDIYVGLANANPIDYYDLFLTPNILEYITEQTNLYATQC 311
W+ + P+A+D VP + ++Y+ L + PI L L PN L + + ++ Q
Sbjct: 619 WQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNL-PN-LHRVARKLDIDCVQA 676
Query: 310 ILPSDSSAG 284
I D G
Sbjct: 677 ITGFDFHGG 685
>D21089-1|BAA04651.1| 940|Homo sapiens XP-C repair complementing
protein (p125) protein.
Length = 940
Score = 30.3 bits (65), Expect = 8.0
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 490 WEMPSHDDPLAIDYTVPCSGMKDIYVGLANANPIDYYDLFLTPNILEYITEQTNLYATQC 311
W+ + P+A+D VP + ++Y+ L + PI L L PN L + + ++ Q
Sbjct: 736 WQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNL-PN-LHRVARKLDIDCVQA 793
Query: 310 ILPSDSSAG 284
I D G
Sbjct: 794 ITGFDFHGG 802
>BC016620-1|AAH16620.1| 940|Homo sapiens xeroderma pigmentosum,
complementation group C protein.
Length = 940
Score = 30.3 bits (65), Expect = 8.0
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 490 WEMPSHDDPLAIDYTVPCSGMKDIYVGLANANPIDYYDLFLTPNILEYITEQTNLYATQC 311
W+ + P+A+D VP + ++Y+ L + PI L L PN L + + ++ Q
Sbjct: 736 WQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNL-PN-LHRVARKLDIDCVQA 793
Query: 310 ILPSDSSAG 284
I D G
Sbjct: 794 ITGFDFHGG 802
>AY131066-1|AAM77801.1| 940|Homo sapiens xeroderma pigmentosum,
complementation group C protein.
Length = 940
Score = 30.3 bits (65), Expect = 8.0
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 490 WEMPSHDDPLAIDYTVPCSGMKDIYVGLANANPIDYYDLFLTPNILEYITEQTNLYATQC 311
W+ + P+A+D VP + ++Y+ L + PI L L PN L + + ++ Q
Sbjct: 736 WQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNL-PN-LHRVARKLDIDCVQA 793
Query: 310 ILPSDSSAG 284
I D G
Sbjct: 794 ITGFDFHGG 802
>AK222844-1|BAD96564.1| 872|Homo sapiens xeroderma pigmentosum,
complementation group C variant protein.
Length = 872
Score = 30.3 bits (65), Expect = 8.0
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 490 WEMPSHDDPLAIDYTVPCSGMKDIYVGLANANPIDYYDLFLTPNILEYITEQTNLYATQC 311
W+ + P+A+D VP + ++Y+ L + PI L L PN L + + ++ Q
Sbjct: 668 WQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNL-PN-LHRVARKLDIDCVQA 725
Query: 310 ILPSDSSAG 284
I D G
Sbjct: 726 ITGFDFHGG 734
>AF261901-1|AAF87574.1| 940|Homo sapiens xeroderma pigmentosum
group C protein protein.
Length = 940
Score = 30.3 bits (65), Expect = 8.0
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 490 WEMPSHDDPLAIDYTVPCSGMKDIYVGLANANPIDYYDLFLTPNILEYITEQTNLYATQC 311
W+ + P+A+D VP + ++Y+ L + PI L L PN L + + ++ Q
Sbjct: 736 WQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNL-PN-LHRVARKLDIDCVQA 793
Query: 310 ILPSDSSAG 284
I D G
Sbjct: 794 ITGFDFHGG 802
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,177,090
Number of Sequences: 237096
Number of extensions: 2761123
Number of successful extensions: 5152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5151
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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