Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00296
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division ...    33   0.17 
Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U67955-3|AAO91745.1|  655|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U67955-2|AAB07583.2|  791|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine re...    29   4.9  

>U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division
           cycle related protein6 protein.
          Length = 518

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 684 RISRRLSTFSDSDIHPLPEIERRRSSRTAPVDLELQPPNVPSTSGNTDAQISEQEWMEE 508
           R S+R   F +S+    P + RR+SSR +   + ++    PS+       +SE+ + EE
Sbjct: 9   RKSQRARDFEESEETEKPSLTRRKSSRLSTQSVPIEKKKTPSSKTTKRVPVSERVFHEE 67


>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
 Frame = +1

Query: 496 CWTVFFHPLLFRNLS----ISITRSTWHVW-WLE 582
           C T   H   F++L+    + I +STWHVW WLE
Sbjct: 195 CATWLTHSSFFQSLTETENLLILKSTWHVWSWLE 228


>U67955-3|AAO91745.1|  655|Caenorhabditis elegans Hypothetical
           protein C16H3.3b protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 723 PSDDNDSQIWNPPRISRRLSTFSDSDIHPLPEIE 622
           P DD   ++W PPR   + +     DI PL E+E
Sbjct: 316 PEDDLPGRVWCPPRGQCQATCEQVVDIGPLTELE 349


>U67955-2|AAB07583.2|  791|Caenorhabditis elegans Hypothetical
           protein C16H3.3a protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 723 PSDDNDSQIWNPPRISRRLSTFSDSDIHPLPEIE 622
           P DD   ++W PPR   + +     DI PL E+E
Sbjct: 452 PEDDLPGRVWCPPRGQCQATCEQVVDIGPLTELE 485


>AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 5 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 335 NQLIRNTVYLTFRFFCW 285
           +Q IRN VY+ F F CW
Sbjct: 257 SQTIRNWVYMAFNFSCW 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,011,853
Number of Sequences: 27780
Number of extensions: 433829
Number of successful extensions: 1284
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)