Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00296
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.2  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   7.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 551 PEVLGTFGGWSSKSTGAVLDDLRRSISGN 637
           P++L  FG WS++      D+ +  +S N
Sbjct: 665 PDLLHLFGSWSNRPNLLFKDEAKDLVSVN 693


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 551 PEVLGTFGGWSSKSTGAVLDDLRRSISGN 637
           P++L  FG WS++      D+ +  +S N
Sbjct: 665 PDLLHLFGSWSNRPNLLFKDEAKDLVSVN 693


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 551 PEVLGTFGGWSSKSTGAVLDDLRRSISGN 637
           P++L  FG WS++      D+ +  +S N
Sbjct: 665 PDLLHLFGSWSNRPNLLFKDEAKDLVSVN 693


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 741 LLVTQVPSDDNDSQIWNPPRISR 673
           ++V  +P+D N  Q+W  P + +
Sbjct: 581 VIVDVIPTDKNPVQLWYVPSLDQ 603


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 214 SIKDYWRNHKLYGTRLH*KYREWNISTVPLILKS 113
           +++  ++N KLYG   + + + +NI     IL S
Sbjct: 85  TLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSS 118


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 483 ISHFMLDCFLPSTLV 527
           I H ++  F PSTLV
Sbjct: 199 IGHHLIQTFAPSTLV 213


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -1

Query: 238 WMGLVKLPSIKDYWRNH-KLYGTRLH 164
           W+G   L S    WRNH KL     H
Sbjct: 121 WLGDGLLISTGQKWRNHRKLIAPTFH 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,788
Number of Sequences: 438
Number of extensions: 5284
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)