Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00295
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   128   2e-31
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   128   2e-31
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   1.4  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    26   1.8  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   1.8  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    24   9.7  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    24   9.7  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  128 bits (310), Expect = 2e-31
 Identities = 56/87 (64%), Positives = 77/87 (88%)
 Frame = +1

Query: 1   AKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL 180
           AKAT DWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL
Sbjct: 47  AKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSL 106

Query: 181 EDVIGIAKIMRNRSMARYLSGSVKEFL 261
           +++I +A+ MR +S+A+ LSG+VKE L
Sbjct: 107 DEIIEVARTMRFKSLAKELSGTVKEIL 133



 Score = 43.2 bits (97), Expect = 1e-05
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +3

Query: 249 KRILGTAQSVGCTVEGRPPHDLIDDINSG 335
           K ILGTA SVGCTV+G+ PHD+  +I++G
Sbjct: 130 KEILGTAFSVGCTVDGKNPHDVQKEIDNG 158


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  128 bits (310), Expect = 2e-31
 Identities = 56/87 (64%), Positives = 77/87 (88%)
 Frame = +1

Query: 1   AKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL 180
           AKAT DWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL
Sbjct: 47  AKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSL 106

Query: 181 EDVIGIAKIMRNRSMARYLSGSVKEFL 261
           +++I +A+ MR +S+A+ LSG+VKE L
Sbjct: 107 DEIIEVARTMRFKSLAKELSGTVKEIL 133



 Score = 43.2 bits (97), Expect = 1e-05
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +3

Query: 249 KRILGTAQSVGCTVEGRPPHDLIDDINSG 335
           K ILGTA SVGCTV+G+ PHD+  +I++G
Sbjct: 130 KEILGTAFSVGCTVDGKNPHDVQKEIDNG 158


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 337 TPLLMSSIRSCGGLPSTVHPTDCAVPRILLLSQKGTGPL 221
           TP+ M    +CG +P         +P +  + +KGT PL
Sbjct: 440 TPIPMVHCETCGAVPVPESELPVKLPDLDKIYEKGTSPL 478


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +1

Query: 31  KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 210
           K + Q ++ N +    V  ++  L    LKE  +D++K ++       S   +   A+  
Sbjct: 23  KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82

Query: 211 RNRSMARYLSGSV 249
           RNR     L  +V
Sbjct: 83  RNRKARENLKVNV 95


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 144 LFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 37
           +FT+ R  LK   +   CR N +  GLS   C  +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 270 QSVGCTVEGRPP 305
           +SVGC VEG PP
Sbjct: 19  KSVGCIVEGCPP 30


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 356 FIHQWSNSAVDVINKIMWRP 297
           +IH  +N A  VIN + W P
Sbjct: 72  YIHTSANKARHVINVVRWTP 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,902
Number of Sequences: 5004
Number of extensions: 31517
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)