Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00295
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 136 8e-33
02_05_0416 + 28791512-28792012 132 1e-31
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858... 30 0.76
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 1.0
04_01_0314 - 4243928-4244361,4245178-4245415 29 1.3
03_06_0776 - 36176390-36177589 29 1.8
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 28 3.1
12_01_0613 + 5060150-5060320,5062255-5062359,5064057-5064143,506... 27 4.1
07_03_0574 - 19629875-19631032 27 4.1
02_01_0428 - 3127098-3129254 27 4.1
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090... 27 5.4
03_06_0499 - 34354040-34354528 27 5.4
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 27 7.1
11_06_0546 + 24853167-24853880 26 9.4
05_01_0358 + 2808627-2809847 26 9.4
03_05_0131 - 21107865-21108085,21108517-21108766,21110310-211105... 26 9.4
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 26 9.4
>04_04_1026 + 30214437-30214937
Length = 166
Score = 136 bits (328), Expect = 8e-33
Identities = 65/88 (73%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 AKATS-DWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIS 177
AK T+ DWKGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNIS
Sbjct: 47 AKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNIS 106
Query: 178 LEDVIGIAKIMRNRSMARYLSGSVKEFL 261
L+DVI IA+IMRNRSMA+ ++G+VKE L
Sbjct: 107 LDDVIEIARIMRNRSMAKEMAGTVKEIL 134
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 249 KRILGTAQSVGCTVEGRPPHDLIDDINSG 335
K ILGT SVGCTV+G+ P DL +I+ G
Sbjct: 131 KEILGTCVSVGCTVDGKDPKDLQQEISDG 159
>02_05_0416 + 28791512-28792012
Length = 166
Score = 132 bits (319), Expect = 1e-31
Identities = 63/88 (71%), Positives = 80/88 (90%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 AKATS-DWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIS 177
AK T+ DWKGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNIS
Sbjct: 47 AKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNIS 106
Query: 178 LEDVIGIAKIMRNRSMARYLSGSVKEFL 261
L+DVI IA++MR RSMA+ ++G+VKE L
Sbjct: 107 LDDVIEIARVMRPRSMAKEMAGTVKEIL 134
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 249 KRILGTAQSVGCTVEGRPPHDLIDDINSG 335
K ILGT SVGCTV+G+ P DL +I+ G
Sbjct: 131 KEILGTCVSVGCTVDGKDPKDLQQEISDG 159
>11_04_0079 -
13284869-13284929,13285518-13285639,13285749-13285820,
13286048-13286200,13289510-13289709,13289745-13289947,
13289991-13290181
Length = 333
Score = 29.9 bits (64), Expect = 0.76
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 340 QTPLLMSSIRSCGGLPSTVHPTDCAVPRI 254
Q PL S+RSCG L + P + ++PR+
Sbjct: 120 QAPLSPKSVRSCGPLKLVIEPYNGSLPRL 148
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 19 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 147
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>04_01_0314 - 4243928-4244361,4245178-4245415
Length = 223
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +1
Query: 73 IAVVPSAAALIIR--ALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGS 246
+ +V S IIR + E +K ++HN S V+G+ ++NRS YL+
Sbjct: 85 VLLVSSILLAIIRLICISEINNPQKSVSKLRHNTTTSRTIVVGLTTSLKNRS---YLNSP 141
Query: 247 VKEFLAQHSQLDVLWRAGRHMILLMTSTA 333
+ H ++ R R + + ++A
Sbjct: 142 KNQVNQSHEHIEWSLRKARALWRMSNASA 170
>03_06_0776 - 36176390-36177589
Length = 399
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 145 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 234
+K+I++ G++ LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +1
Query: 118 KEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEFLAQHSQLDVLWRA 297
K D +K K GN+ E + + +I++ R+ L G V E ++ LW
Sbjct: 291 KREMSDEEKHKLRVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWEL 350
Query: 298 GRHMI 312
R ++
Sbjct: 351 DRFVV 355
>12_01_0613 +
5060150-5060320,5062255-5062359,5064057-5064143,
5064265-5064318,5064402-5064547,5064651-5064804,
5064891-5065028,5065454-5065527,5065615-5065756,
5066396-5066474,5067326-5067423
Length = 415
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +1
Query: 100 LIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEFLAQHS 273
LI RALK P +++ ++HN I++E ++K+M + + YL V ++ HS
Sbjct: 270 LIARALKGPLAPSQQEDLVEHNPLIAVEI---LSKLMNSPDIDGYLDVLVHMEMSLHS 324
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 197 IPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 69
+P E++P C ++F F R+ G SL A + AA +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290
>02_01_0428 - 3127098-3129254
Length = 718
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +1
Query: 151 NIKHN---GNISLEDVIGIAKIMRNRSMARYLSGSVKEFLAQHSQLDV 285
N+ HN G + LE+++ ++ +LSG+++EF AQ S+ +
Sbjct: 94 NLSHNLLSGELPLEELVSSTSLVILDISFNHLSGALQEFSAQISETTI 141
>07_01_1116 +
10308029-10308111,10308575-10308737,10308996-10309062,
10309120-10309375,10309658-10309781,10310039-10310077
Length = 243
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 105 DKGCCRGNNSYLGL-SVLNCQLHSD 34
D GCC SYLGL +L C++++D
Sbjct: 62 DCGCCYALPSYLGLFHILICKVYAD 86
>03_06_0499 - 34354040-34354528
Length = 162
Score = 27.1 bits (57), Expect = 5.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -1
Query: 230 RAIDLFLMIFA-IPITSSREMLPLCLIFFCFLRSRGGSLRALMIRAAAEGTTAIWACLF* 54
R I+ +L+ ++ + S ++ L FF RGG R+L AA+G A W C
Sbjct: 47 RGIERYLLSWSDFLLGSGAKLKEKYLGFFSGEGERGGEARSL----AAKGAAAAWPCCDN 102
Query: 53 TVSCTVILRP 24
CT + P
Sbjct: 103 CGGCTKSIPP 112
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 26.6 bits (56), Expect = 7.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 207 HEKQINGPVPFWLS 248
H Q+NGP+P W S
Sbjct: 481 HNNQLNGPIPTWTS 494
>11_06_0546 + 24853167-24853880
Length = 237
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 361 KHLFINGQTPLLMSSIRSCGGLPS-TVHPTDCAVPRILLLSQK 236
KHL +NG LL+SS+ + + T+H T + +L++K
Sbjct: 38 KHLELNGNKSLLLSSLENAKNISKVTLHSTWLDRANLQILAKK 80
>05_01_0358 + 2808627-2809847
Length = 406
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 146 CFLRSRGGSLRALMIRAAAEGTTAIWACLF 57
C L +G SLRA + AAA+G + A L+
Sbjct: 249 CELSRQGRSLRAAHVVAAADGVDLLLAVLY 278
>03_05_0131 -
21107865-21108085,21108517-21108766,21110310-21110549,
21111104-21111234,21114107-21114365
Length = 366
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 286 VHPTDCAVPRILLLSQKGTGPLI 218
VHPT AV +++ ++ G+ PL+
Sbjct: 333 VHPTQAAVEKLMKIAFDGSAPLV 355
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 26.2 bits (55), Expect = 9.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 108 DDKGCCRGNNSYL 70
+DKGCC+G N +L
Sbjct: 719 EDKGCCKGLNEFL 731
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,053,880
Number of Sequences: 37544
Number of extensions: 223215
Number of successful extensions: 646
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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