Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00295
(392 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 2e-35
SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05) 29 1.3
SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3) 28 2.3
SB_4592| Best HMM Match : Ribosomal_S30AE (HMM E-Value=2.6) 27 4.1
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35) 27 7.2
SB_5415| Best HMM Match : ROK (HMM E-Value=1.2e-23) 27 7.2
SB_57223| Best HMM Match : HR1 (HMM E-Value=3.2) 26 9.5
SB_48353| Best HMM Match : Erp_C (HMM E-Value=2.6) 26 9.5
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_34304| Best HMM Match : HR1 (HMM E-Value=3.2) 26 9.5
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_28357| Best HMM Match : HR1 (HMM E-Value=3.2) 26 9.5
SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5) 26 9.5
>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 144 bits (349), Expect = 2e-35
Identities = 67/87 (77%), Positives = 80/87 (91%)
Frame = +1
Query: 1 AKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL 180
AKAT DWKGLKITV LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L
Sbjct: 47 AKATQDWKGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITL 106
Query: 181 EDVIGIAKIMRNRSMARYLSGSVKEFL 261
+DV +AK+MR RSMAR+LSG+VKE L
Sbjct: 107 DDVTNVAKVMRPRSMARHLSGTVKEIL 133
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = +3
Query: 249 KRILGTAQSVGCTVEGRPPHDLIDDINSG 335
K ILGT QSVGCTV+G PHD+ID INSG
Sbjct: 130 KEILGTCQSVGCTVDGMAPHDVIDKINSG 158
>SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 876
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 260 KNSFTEPERYRAIDLFLMIFAIPITSSREMLPLCLIF 150
KN+F++ R +IDLFL + + LPL L+F
Sbjct: 780 KNNFSDGYRQDSIDLFLGNYVVDANECVSKLPLILLF 816
>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
Length = 302
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 31 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 162
++ ++ RQ + +PSA IR +E PR +K N+KH
Sbjct: 97 RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140
>SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)
Length = 193
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 264 TAQSVGCTVEGRPPHDLIDDINSG 335
T + C VE PPH++ D +N G
Sbjct: 150 TLNQLYCPVEPNPPHNMFDHVNLG 173
>SB_4592| Best HMM Match : Ribosomal_S30AE (HMM E-Value=2.6)
Length = 552
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 223 MARYLSGSVKEFLAQHSQLDVLWRAGRHM 309
+ ++L GSV FL +H + V W +H+
Sbjct: 46 LTKHLEGSVTRFLTKHLEGSVTWFLTKHL 74
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 217 RSMARYLSGSVKEFLAQHSQLDVLWRAGRHM 309
R + ++L GSV FL +H + V W +H+
Sbjct: 56 RFLTKHLEGSVTWFLTKHLEGSVTWFLTKHL 86
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 223 MARYLSGSVKEFLAQHSQLDVLWRAGRHM 309
+ ++L GSV FL +H + + W +H+
Sbjct: 82 LTKHLEGSVTWFLTKHLERSITWFLTKHL 110
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 223 MARYLSGSVKEFLAQHSQLDVLWRAGRHMIL 315
+ ++L GSV FL +H + V W+ ++L
Sbjct: 250 LTKHLEGSVTWFLTKHLEGSVTWKGTNTLVL 280
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 223 MARYLSGSVKEFLAQHSQLDVLWRAGRHM 309
+ ++L GSV FL +H + V W +H+
Sbjct: 70 LTKHLEGSVTWFLTKHLEGSVTWFLTKHL 98
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 223 MARYLSGSVKEFLAQHSQLDVLWRAGRHM 309
+ ++L GSV FL +H + V W +H+
Sbjct: 130 LTKHLEGSVTWFLTKHLEGSVTWFLTKHL 158
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 223 MARYLSGSVKEFLAQHSQLDVLWRAGRHM 309
+ ++L GSV FL +H + V W +H+
Sbjct: 142 LTKHLEGSVTWFLTKHLEGSVTWFLTKHL 170
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 223 MARYLSGSVKEFLAQHSQLDVLWRAGRHM 309
+ ++L GSV FL +H + V W +H+
Sbjct: 154 LTKHLEGSVTWFLTKHLEGSVTWFLTKHL 182
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 223 MARYLSGSVKEFLAQHSQLDVLWRAGRHM 309
+ ++L GSV FL +H + V W +H+
Sbjct: 166 LTKHLEGSVTWFLTKHLEGSVTWFLTKHL 194
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 223 MARYLSGSVKEFLAQHSQLDVLWRAGRHM 309
+ ++L GSV FL +H + V W +H+
Sbjct: 178 LTKHLEGSVTWFLTKHLEGSVTWFLTKHL 206
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 223 MARYLSGSVKEFLAQHSQLDVLWRAGRHM 309
+ ++L GSV FL +H + V W +H+
Sbjct: 190 LTKHLEGSVTWFLTKHLEGSVTWILTKHL 218
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 223 MARYLSGSVKEFLAQHSQLDVLWRAGRHM 309
+ ++L GSV FL +H + V W +H+
Sbjct: 226 LTKHLEGSVTWFLTKHLEGSVTWILTKHL 254
>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
Length = 1595
Score = 26.6 bits (56), Expect = 7.2
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 88 SAAALIIRALKEPPRDRKKQKNIKHNGNI-SLEDVIGIAKIMRNRSMARYLSGS 246
SAA +I R L+EP R+ Q N H+ + L D KI R S R+ S S
Sbjct: 200 SAAQVIQRILEEPDDPRENQSNNPHDQSTRPLSD-----KIPREESAVRFPSDS 248
>SB_5415| Best HMM Match : ROK (HMM E-Value=1.2e-23)
Length = 313
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 258 LGTAQSVGCTVEGRPPHDLI 317
+GT VG TVEG P H L+
Sbjct: 147 VGTGVGVGVTVEGSPVHGLL 166
>SB_57223| Best HMM Match : HR1 (HMM E-Value=3.2)
Length = 209
Score = 26.2 bits (55), Expect = 9.5
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +1
Query: 52 VQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMAR 231
V+N +A+ VV S I +KE D+K + ++ N +L++V R AR
Sbjct: 25 VENCRAKRKVVRSNCTRNINKIKELLPDKKNKSKVRQFAN-NLDEV---------RGKAR 74
Query: 232 YLSGSVKEFLAQHSQLDVLW 291
L+ ++E +H + D W
Sbjct: 75 ELTAELEELDPEHIEADGDW 94
>SB_48353| Best HMM Match : Erp_C (HMM E-Value=2.6)
Length = 220
Score = 26.2 bits (55), Expect = 9.5
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +1
Query: 52 VQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMAR 231
V+N +A+ VV S I +KE D+K + ++ N +L++V R AR
Sbjct: 8 VENCRAKRKVVRSNCTRNINKIKELLPDKKNKSKVRQFAN-NLDEV---------RGKAR 57
Query: 232 YLSGSVKEFLAQHSQLDVLW 291
L+ ++E +H + D W
Sbjct: 58 ELTADLEELDPEHIEADGDW 77
>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 26.2 bits (55), Expect = 9.5
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +1
Query: 52 VQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMAR 231
V+N +A+ VV S I +KE D+K + ++ N +L++V R AR
Sbjct: 316 VENCRAKRKVVRSNCTRNINKIKELLPDKKNKSKVRQFAN-NLDEV---------RGKAR 365
Query: 232 YLSGSVKEFLAQHSQLDVLW 291
L+ ++E +H + D W
Sbjct: 366 ELTAELEELDPEHIEADGDW 385
>SB_34304| Best HMM Match : HR1 (HMM E-Value=3.2)
Length = 245
Score = 26.2 bits (55), Expect = 9.5
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +1
Query: 52 VQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMAR 231
V+N +A+ VV S I +KE D+K + ++ N +L++V R AR
Sbjct: 130 VENCRAKRKVVRSNCTRNINKIKELLPDKKNKSKVRQFAN-NLDEV---------RGKAR 179
Query: 232 YLSGSVKEFLAQHSQLDVLW 291
L+ ++E +H + D W
Sbjct: 180 ELTAELEELDPEHIEADGDW 199
>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1683
Score = 26.2 bits (55), Expect = 9.5
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +1
Query: 52 VQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMAR 231
V+N +A+ VV S I +KE D+K + ++ N +L++V R AR
Sbjct: 128 VENCRAKRKVVRSNCTRNINKIKELLPDKKNKSKVRQFAN-NLDEV---------RGKAR 177
Query: 232 YLSGSVKEFLAQHSQLDVLW 291
L+ ++E +H + D W
Sbjct: 178 ELTAELEELDPEHIEADRDW 197
>SB_28357| Best HMM Match : HR1 (HMM E-Value=3.2)
Length = 123
Score = 26.2 bits (55), Expect = 9.5
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +1
Query: 52 VQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMAR 231
V+N +A+ VV S I +KE D+K + ++ N +L++V R AR
Sbjct: 47 VENCRAKRKVVRSNCTRNINKIKELLPDKKNKSKVRQFAN-NLDEV---------RGKAR 96
Query: 232 YLSGSVKEFLAQHSQLDVLW 291
L+ ++E +H + D W
Sbjct: 97 ELTAELEELDPEHIEADGDW 116
>SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)
Length = 1072
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 52 VQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAK 204
V+N QA+ VV S I +KE D+K + ++ N +L++V G A+
Sbjct: 727 VENCQAKRKVVRSNCTRNINKIKELLPDKKNKSKVRQFAN-NLDEVRGKAR 776
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,438,046
Number of Sequences: 59808
Number of extensions: 245341
Number of successful extensions: 665
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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