Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00295
(392 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical pr... 127 2e-30
Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical p... 48 2e-06
Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical pr... 30 0.68
AF016443-2|AAC24272.1| 359|Caenorhabditis elegans Hypothetical ... 29 1.6
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 28 2.7
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 28 2.7
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 28 2.7
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 28 2.7
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 28 2.7
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 28 2.7
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 27 6.3
U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate rece... 26 8.4
AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA iono... 26 8.4
>Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical
protein JC8.3a protein.
Length = 165
Score = 127 bits (307), Expect = 2e-30
Identities = 58/87 (66%), Positives = 75/87 (86%)
Frame = +1
Query: 1 AKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL 180
AKAT DWKGLK+T +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG++++
Sbjct: 47 AKATQDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTV 106
Query: 181 EDVIGIAKIMRNRSMARYLSGSVKEFL 261
+ +I IA+IMR RSMA+ L G+VKE L
Sbjct: 107 DTIIKIARIMRPRSMAKKLEGTVKEIL 133
Score = 48.0 bits (109), Expect = 2e-06
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +3
Query: 249 KRILGTAQSVGCTVEGRPPHDLIDDINSG 335
K ILGTAQSVGCT++G+ PHD+I+ I +G
Sbjct: 130 KEILGTAQSVGCTIDGQHPHDIIESIANG 158
>Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical
protein JC8.3c protein.
Length = 50
Score = 48.0 bits (109), Expect = 2e-06
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +3
Query: 249 KRILGTAQSVGCTVEGRPPHDLIDDINSG 335
K ILGTAQSVGCT++G+ PHD+I+ I +G
Sbjct: 15 KEILGTAQSVGCTIDGQHPHDIIESIANG 43
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 208 MRNRSMARYLSGSVKEFL 261
MR RSMA+ L G+VKE L
Sbjct: 1 MRPRSMAKKLEGTVKEIL 18
>Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical
protein B0464.6 protein.
Length = 643
Score = 29.9 bits (64), Expect = 0.68
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 115 LKEPPRDRKKQKNIKH-NGNISLEDVIGIAKIMRNRSMARYLSGSVKEFLAQHSQLDVLW 291
L++ P KK + N+S+ D GI + + + + G E + QLDVL
Sbjct: 184 LQQSPSPNKKSPSYSQVMSNVSVSDTSGILEDTKGGWKSPAVYGKSNESIHTRKQLDVLL 243
Query: 292 RAGRHMILLMTSTAEF 339
R+ + I + +T+ F
Sbjct: 244 RSNQDEIPVDMNTSTF 259
>AF016443-2|AAC24272.1| 359|Caenorhabditis elegans Hypothetical
protein C17E7.6 protein.
Length = 359
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +1
Query: 169 NISLEDVIGIAKI-MRNRSMARYLSGSVKEFLAQHSQLDVL 288
N+SLE ++ ++ M++R++ +Y+S FLA ++ +D+L
Sbjct: 135 NLSLEQIVDTRRMKMKSRTINKYISPQDWTFLALYTTVDLL 175
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 144 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 19
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 144 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 19
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 144 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 19
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 144 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 19
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 144 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 19
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 144 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 19
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 210 EKQINGPVPFWLSK--RILGTAQSVGCTVEGRPPHDLI 317
+K +NG + +L++ +I GT +GC + R DLI
Sbjct: 660 QKSVNGQLEVFLTRFGKISGTHHFIGCMADVRVDGDLI 697
>U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform b protein.
Length = 977
Score = 26.2 bits (55), Expect = 8.4
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +1
Query: 106 IRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEFLAQHSQLDV 285
+RAL+E +K+ + N ++ D+ G + N ++ R + K+FL ++
Sbjct: 255 LRALEESVLVKKEYHYVFSNFDVDETDLSGFHFSLINITIFRIFDKNNKKFLKTRAEFHD 314
Query: 286 LWRAGRHMILLMTSTAEFDH 345
++R G + + A F H
Sbjct: 315 VYRGGFSNTDSIPTAAAFAH 334
>AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA
ionotropic glutamate receptorsubunit GLR-2 protein.
Length = 977
Score = 26.2 bits (55), Expect = 8.4
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +1
Query: 106 IRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEFLAQHSQLDV 285
+RAL+E +K+ + N ++ D+ G + N ++ R + K+FL ++
Sbjct: 255 LRALEESVLVKKEYHYVFSNFDVDETDLSGFHFSLINITIFRIFDKNNKKFLKTRAEFHD 314
Query: 286 LWRAGRHMILLMTSTAEFDH 345
++R G + + A F H
Sbjct: 315 VYRGGFSNTDSIPTAAAFAH 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,238,082
Number of Sequences: 27780
Number of extensions: 185799
Number of successful extensions: 508
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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