Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00295
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   3.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   8.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 142 KQKNIKHNGNISLEDVIGIAKIMRNRSMARYLS 240
           K+K I +   +++ D  G+  +  NR+   YL+
Sbjct: 131 KKKGINNGIIVNINDASGLNLLPMNRNRPAYLA 163


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 13/63 (20%), Positives = 27/63 (42%)
 Frame = +3

Query: 147  EKYQTQRQHLP*GCNRNCEDHEKQINGPVPFWLSKRILGTAQSVGCTVEGRPPHDLIDDI 326
            ++ Q Q+Q       +  + H+ +    V   +++   GT+ S G     + P D+ + I
Sbjct: 1214 QQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETSAGTSNSRGAAQMSKVPRDVSEGI 1273

Query: 327  NSG 335
              G
Sbjct: 1274 YDG 1276


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 261 GTAQSVGCTVEGRPPHDLI 317
           GT   V C   G P  D+I
Sbjct: 18  GTGAVVECQARGNPQPDII 36


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 189 YILKGDVAVVFDI 151
           Y+ KGD  V FDI
Sbjct: 20  YVPKGDNKVAFDI 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,715
Number of Sequences: 438
Number of extensions: 2570
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)