Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00294
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    31   0.18 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   5.0  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   5.0  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   6.6  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    26   6.6  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   8.7  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   8.7  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    25   8.7  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +3

Query: 459 RLLHHFRSVHAPVFSSGYNLKENLQENH----LQFLQL-FTQYAKAADNGEELKSFQNLL 623
           R+   +  + +P  S G++L  N+ E++    L  L+  F        +G +   F+ + 
Sbjct: 515 RIKREYIKIASP--SPGWSLPTNVDEDYDNVLLDSLKFYFKLLTLKLSSGNKNLYFKEID 572

Query: 624 FLIRDWSYYDTHPYGSKGGDSLVAKRF 704
           FL  +W++ + H Y   GGD  +A +F
Sbjct: 573 FLENEWAFLNEHIYWINGGDIHMAGQF 599


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 335 SDPPRHVKPPRGSESSPKGLALSPFS 258
           S+PPR + PP G  ++P     +P S
Sbjct: 639 SNPPRSLPPPSGQVNAPMSQTPNPIS 664


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +1

Query: 271 NAKPLG-EDSEPLGGFTWRGGSER----NTVGLL-IWSEPIIKTLENGDK 402
           N KP   ED E  GG  WRG  ++      +G   IW  PIIK +E   K
Sbjct: 48  NPKPCNPEDREYCGG-NWRGIIDKLDYIQGMGFTAIWISPIIKNIEGRTK 96


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 292 DSEPLGGFTWRGGSERNTVGLL 357
           D EP+G   WR G + + V LL
Sbjct: 330 DLEPVGAHLWRSGWDSDAVALL 351


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 202 KIVPAKLLFEISAFACF*GEKGDNAKPLGEDSEPLGGFTWRGGSERNTVGLLIWSEPIIK 381
           +++P  +LFE   F     E       LG++S+ L      G S  N +     SE I++
Sbjct: 277 QVIPLSVLFEEQLFMLTPEEAAQECASLGKNSQ-LSEIICAGYSALNLIHYFTASEKIVQ 335

Query: 382 --TLENGDK 402
             T+ +G K
Sbjct: 336 AWTIADGSK 344


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = -2

Query: 183 ATLNNTTGKSLTSSRFSTLCNATTSKSNEPSS 88
           ++++ ++  SL+SS FST+ ++T + S  PSS
Sbjct: 159 SSVSTSSFTSLSSSGFSTVLSSTNTTSALPSS 190


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 657  HPYGSKGG-DSLVAKRFEVTKDL 722
            HPYG KGG D+   K   + KD+
Sbjct: 1223 HPYGMKGGKDAECGKNIWIRKDI 1245


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 725 RKILRHLKSFSD 690
           RK+LRH+K FSD
Sbjct: 128 RKVLRHMKEFSD 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,176
Number of Sequences: 5004
Number of extensions: 63991
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)