Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00294
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434... 42 7e-04
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692... 40 0.003
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 37 0.020
01_03_0177 + 13470784-13471609,13472263-13472423,13472575-134727... 29 3.0
05_06_0029 - 25057067-25057083,25057250-25057309,25057565-250576... 29 5.2
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 28 6.9
01_06_0253 - 27901204-27901251,27901673-27901744,27901944-279020... 28 9.1
>07_01_0584 +
4345134-4345237,4346165-4346267,4346397-4346466,
4346552-4346590,4346684-4346801,4346894-4346951,
4347031-4347095,4347281-4347341,4347678-4347779,
4348005-4348070,4348399-4348443,4348540-4348797,
4349289-4349501,4350103-4350411,4350461-4350613
Length = 587
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Frame = +1
Query: 334 ERNTVGLLIWSEPIIKTLENGDKVAVLLMDTQGLFDS--KTTMRDCSIIFALSTLLSSV 504
+ T G+ +W PI + NG KV+VL +DT+G F+S K+ + D IFAL+T+LSS+
Sbjct: 101 DTKTKGIWVWGTPIELDV-NGSKVSVLYLDTEG-FESIGKSNVYD-DRIFALATVLSSI 156
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 155 DLPVVLFSVAGPFRTGKSFLLNYFL 229
+ P+ +V GP+R+GKSFLLN L
Sbjct: 62 ETPIAAVAVIGPYRSGKSFLLNQLL 86
>03_06_0300 +
32967935-32968029,32968975-32969077,32969175-32969244,
32969464-32969581,32969687-32969744,32969831-32969895,
32969990-32969996,32970087-32970147,32970757-32970776,
32970858-32970923,32971126-32971293,32971372-32971629,
32972098-32972310,32972824-32973099
Length = 525
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Frame = +1
Query: 349 GLLIWSEPIIKTLENGDKVAVLLMDTQGLFDS--KTTMRDCSIIFALSTLLSSV 504
G+ IW P+ ++ G KV+VL +DT+G F+S K+ + D IFAL+T+LSSV
Sbjct: 90 GIWIWGTPVEMDID-GSKVSVLYLDTEG-FESVGKSNVYD-DRIFALATVLSSV 140
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 155 DLPVVLFSVAGPFRTGKSFLLNYFL 229
+ P+ + V GP+R+GKSFLLN L
Sbjct: 59 ETPIAVVGVIGPYRSGKSFLLNQLL 83
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 36.7 bits (81), Expect = 0.020
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 343 TVGLLIWSEPIIKTLENGDKVAVLLMDTQGLFDSKTTMRDCSIIFALSTLLSSV 504
T GL +WS P+ +T +G + ++L+DT+G+ T IF+L+ LLSS+
Sbjct: 101 TKGLWMWSAPLKRTGLDGTEYNLVLLDTEGIDAYDQTGTYSIQIFSLAVLLSSM 154
>01_03_0177 +
13470784-13471609,13472263-13472423,13472575-13472785,
13473092-13473161,13489257-13489410,13489532-13489777
Length = 555
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -2
Query: 186 PATLNNTTGKSLTSSRFSTLCNATTSKSNEPSSLYLSNWISLG 58
PA T S T S +T CNAT S YLSN +LG
Sbjct: 17 PAASGQDTS-SATVSPLNTHCNATAGNHTAVGSAYLSNLRALG 58
>05_06_0029 -
25057067-25057083,25057250-25057309,25057565-25057665,
25057803-25058011,25058097-25058260,25058292-25058418,
25059110-25059157
Length = 241
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 268 DNAKPLGEDS-EPLGGFTWRGGSERNTVGLLIWSEPIIKTLENGDKVAVLLMDTQGLFDS 444
D+ + L S +P G+ +RG G + P+ K L NG V V + T G+FD
Sbjct: 90 DSRRELEPQSVDPKKGWGFRGVHRAIICGK-VGQVPVQKILRNGRTVTVFTVGTGGMFDQ 148
Query: 445 K 447
+
Sbjct: 149 R 149
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = -3
Query: 377 MIGSDQIKRPTVLRSDP---PRHVK--PPRGSESSPKGLALSPFSP 255
++GS Q+KRP V RSDP P+H+ P + P+ A P P
Sbjct: 135 LMGS-QLKRPNVGRSDPTAQPQHMPLGPASAAAPPPQAAAAPPAQP 179
>01_06_0253 -
27901204-27901251,27901673-27901744,27901944-27902030,
27902484-27902574,27903706-27903769,27904354-27904461,
27905124-27905181,27905813-27905956,27906307-27906372,
27907227-27907299,27908439-27908500,27908923-27909000,
27909124-27909229,27909317-27909483,27909961-27910048,
27911204-27911313,27911833-27911928,27912354-27912461,
27912568-27912711,27913850-27914065
Length = 661
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 216 SRNDFPVRNGPATLNNTTGKSLTSSRFSTLCNATTSK-SNEPSSLYLSNWIS 64
SR DF + A L+ + +TS F+TLCN K EP YL + S
Sbjct: 398 SREDFELIF--AELDQSGDFKVTSEEFATLCNTIAIKFQKEPPPSYLEKYPS 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,250,788
Number of Sequences: 37544
Number of extensions: 432280
Number of successful extensions: 1350
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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