Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00294
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37041| Best HMM Match : GBP (HMM E-Value=0) 101 6e-22
SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28) 42 4e-04
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31) 33 0.33
SB_34624| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_46192| Best HMM Match : ubiquitin (HMM E-Value=0.12) 29 3.0
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_44877| Best HMM Match : GSHPx (HMM E-Value=2.9) 29 5.3
SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22) 28 7.0
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35) 28 9.3
SB_56569| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
Length = 466
Score = 101 bits (242), Expect = 6e-22
Identities = 45/78 (57%), Positives = 61/78 (78%)
Frame = +1
Query: 283 LGEDSEPLGGFTWRGGSERNTVGLLIWSEPIIKTLENGDKVAVLLMDTQGLFDSKTTMRD 462
LG ++E L GF+WRGGSER+T G+L+W++P I +G++V VLLMDTQG FDS +T++D
Sbjct: 7 LGGETEALEGFSWRGGSERDTTGILMWNKPYICKRPDGEEVVVLLMDTQGAFDSSSTVKD 66
Query: 463 CSIIFALSTLLSSVQATT 516
C+ IFALST+ SS Q T
Sbjct: 67 CATIFALSTMTSSTQLFT 84
Score = 48.8 bits (111), Expect = 5e-06
Identities = 24/80 (30%), Positives = 43/80 (53%)
Frame = +3
Query: 498 FSSGYNLKENLQENHLQFLQLFTQYAKAADNGEELKSFQNLLFLIRDWSYYDTHPYGSKG 677
F +K L N ++ Q+ + +N +E+K FQ LLFL+RDWS+ YG G
Sbjct: 99 FQVNNEIKPFLLNNEIKPFQVNNEIKPFQEN-KEIKPFQRLLFLVRDWSFPYEANYGEAG 157
Query: 678 GDSLVAKRFEVTKDLSTDMV 737
G ++ +R + T+ ++++
Sbjct: 158 GSQILERRLKTTERQHSELL 177
>SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)
Length = 368
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/53 (33%), Positives = 36/53 (67%)
Frame = +1
Query: 343 TVGLLIWSEPIIKTLENGDKVAVLLMDTQGLFDSKTTMRDCSIIFALSTLLSS 501
T+G+ +W +P+ L++G +VA++ +DT+G + + + +FA++TLLSS
Sbjct: 155 TMGIWMWGKPLKIKLQDGQEVALVFLDTEGFAATNVSESYDAKVFAVATLLSS 207
Score = 31.1 bits (67), Expect = 1.00
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +2
Query: 41 ASMSGTPREIQLLKYKDDGSFDLDVVALQSVLNRDDVKDLPVVLFSVAGPFRTGKSFLLN 220
+S+ + +QL+ Y D S V+ +++ +++ P+ +V G F TGKSFLLN
Sbjct: 79 SSIKELDKPVQLV-YPDQSSHKQLVLHKENLRLLQLIQE-PIATVAVVGKFHTGKSFLLN 136
Query: 221 YFL 229
+
Sbjct: 137 QLM 139
>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
Length = 708
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 391 NGDKVAVLLMDTQGLFDSKTTMRDCSIIFALSTLLSSV 504
NG +V V+L+D++G+ + D +F LS LLSSV
Sbjct: 103 NGREVTVVLLDSEGINATGAQKSDDHSVFTLSVLLSSV 140
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 146 DVKDLPVVLFSVAGPFRTGKSFLLN 220
D+K PV + S+AGP R GKS++++
Sbjct: 45 DIKG-PVCVVSIAGPCRKGKSYIIS 68
>SB_34624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 31.1 bits (67), Expect = 1.00
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +3
Query: 378 KNP*EWR*GCSTVDGHARFVRQQNHDERLLHHFRSVHAPVFSSGYNLKENLQENHLQFLQ 557
+NP EWR CS+ G + + + LHH V P SG+ LK HL L+
Sbjct: 298 ENP-EWR-VCSSPSGPLPSISSFSSEHEGLHHLDLVSHPEIPSGFPLKPKDHLPHLTGLE 355
Query: 558 L 560
L
Sbjct: 356 L 356
>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +2
Query: 161 PVVLFSVAGPFRTGKSFLLNYFLRYL 238
PVV+F GPF TGKSF LN +R L
Sbjct: 321 PVVVF---GPFGTGKSFTLNQGVRQL 343
>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1177
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 480 SVHAPVFSSGYNLKENLQENHLQFLQLF 563
S H +NL+E+LQEN + FLQ+F
Sbjct: 320 SGHGDSLMGSFNLQEHLQENVVLFLQVF 347
>SB_46192| Best HMM Match : ubiquitin (HMM E-Value=0.12)
Length = 533
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 468 HHFRSVHAPVFSSGYNLKENLQENHLQFL 554
HHFRS+ P F SG+N K +Q Q L
Sbjct: 505 HHFRSISPPNF-SGHNTKAKVQHRKPQIL 532
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +3
Query: 516 LKENLQENHLQFLQLFTQYAKAADNGEELKSFQNLLF---LIRDWSYYDTHPYGSKGGDS 686
L+ L ++ ++ +L + ++ DNG++ K Q +L L + Y KGG
Sbjct: 184 LELKLAQDAIRKRKLSSSVDESQDNGKKAKKIQIVLKNTQLGEGDTEYSIRDCDEKGGWH 243
Query: 687 LVAKRFEVTKDLSTDMVDYE 746
+V + EV+K STD+ E
Sbjct: 244 MVGQEDEVSKTKSTDLPQVE 263
>SB_44877| Best HMM Match : GSHPx (HMM E-Value=2.9)
Length = 326
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 504 SGYNLKENLQENHLQFLQLFTQYAKAADNGE----ELKSFQNLLFLIRDWSYYDTH 659
SGY+ K++ E +F+ L+ +Y + + ++K+ +L L+ W++YD H
Sbjct: 179 SGYSDKDHTYE---EFVNLYREYKEDMEKDACEIYDVKNITSLSKLLEGWNHYDPH 231
>SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)
Length = 621
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 161 PVVLFSVAGPFRTGKSFLL 217
PV + SV GP R GKSF+L
Sbjct: 147 PVCVVSVTGPCRKGKSFIL 165
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 639 WSYYDTHPYGSKGGDSLVAKRFEVTKDLSTDM 734
W+ +T P G +GG A+R + K L T++
Sbjct: 339 WNISNTSPQGCQGGGGYTARRLKGRKRLGTEL 370
>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1671
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 444 AVEQTLRVHQQYCNLISILKGFYDRFRPDQETDSVALRSTAPRE 313
+VE ++R H Y LI +K F+D +Q+ + T P +
Sbjct: 1586 SVEMSVRAHGMYIVLIFSIKEFFDDEEAEQQPPTEEQTETRPED 1629
>SB_56569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 633 VSGRADFGTTSILLRYQLLSHTV*TTEGTEDDSPGDSLSGCSLN*RQERGQSENDGAISH 454
V+G D T ++ H G D S + G + R Q+ENDG ISH
Sbjct: 299 VAGLMDTDTRKRAESKLIIEHNTLAPSGLRDSSVSFRVPGSLGSGRSNPYQNENDGIISH 358
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,345,855
Number of Sequences: 59808
Number of extensions: 505923
Number of successful extensions: 1425
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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