Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00294
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.19 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = -3

Query: 329 PPRHVKPPRGSESSPKGLALSPFSP*KQANADISKSSLAGTIFQCGMVQPR*ITQQASL* 150
           PP    P      +P  + +SP S   Q    + +  L+ T  Q  M Q     QQ    
Sbjct: 46  PPPGGPPGAPPSQNPSQMMISPASGIHQMQQLLQQHILSPTQLQSFMQQHSLYLQQQQQQ 105

Query: 149 HHRDSA 132
           HH+DS+
Sbjct: 106 HHQDSS 111


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +3

Query: 522 ENLQENHLQFLQLFTQYAKAADNGEELKSFQNLLFLIRDWSYY 650
           +NL        + FT Y  +  N  E    +  L   R++SYY
Sbjct: 202 KNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYY 244


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +3

Query: 522 ENLQENHLQFLQLFTQYAKAADNGEELKSFQNLLFLIRDWSYY 650
           +NL        + FT Y  +  N  E    +  L   R++SYY
Sbjct: 202 KNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYY 244


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 495 QERGQSENDGAISHRGFAVEQTLRVHQQ 412
           Q R   E DG +   GF   Q + VH+Q
Sbjct: 254 QVRFFEEKDGQVLWEGFGDFQPVHVHKQ 281


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 495 QERGQSENDGAISHRGFAVEQTLRVHQQ 412
           Q R   E DG +   GF   Q + VH+Q
Sbjct: 254 QVRFFEEKDGQVLWEGFGDFQPVHVHKQ 281


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 480 SVHAPVFSSGYNLKENLQENHLQFLQLFTQY 572
           +VH PVF   Y    NL + + Q L ++ QY
Sbjct: 428 AVHDPVFYQLYKKVMNLYQQYQQSLPVY-QY 457


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 453 DERLLHHFRSVHAPVFSSGYNLKENLQENHLQ 548
           D   +H F +      S  + +KE  +E+HL+
Sbjct: 172 DSMFVHTFGAYFGLAISFVFGMKEKRKEHHLE 203


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 423 HARFVRQQNHDERLLHHFRSVHAPVFSSGYNLKENLQE 536
           HAR + Q NH +  L      H    ++G   +E L++
Sbjct: 223 HARLMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQ 260


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
 Frame = -3

Query: 422 SINSTATLSPFSRVFM-------IGSDQIKRPTVLRSDPPRHVKPPRGSESSPKGLALSP 264
           S  S+ T+ PF R F        IG D ++R        P+H+  P+G++   +G A+  
Sbjct: 546 STKSSVTI-PFERTFRNLDENRPIGGDSLERFDFCGCGWPQHMLIPKGNK---EGFAMEL 601

Query: 263 F 261
           F
Sbjct: 602 F 602


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,505
Number of Sequences: 438
Number of extensions: 4318
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)