Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00293
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006678-2|AAK68392.2|  315|Caenorhabditis elegans Hypothetical ...    30   2.0  
AC006678-1|AAU20842.1|  337|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine...    29   2.6  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    29   2.6  
Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    28   6.1  

>AC006678-2|AAK68392.2|  315|Caenorhabditis elegans Hypothetical
           protein R05G9.2a protein.
          Length = 315

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 654 LRVVYIIKTPFTVYYHVINDHIIRILHSFRG 562
           L +++ I     +YY VIND  + ILH+F G
Sbjct: 201 LFILWAILIGLCLYYQVINDFWLSILHAFTG 231


>AC006678-1|AAU20842.1|  337|Caenorhabditis elegans Hypothetical
           protein R05G9.2b protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 654 LRVVYIIKTPFTVYYHVINDHIIRILHSFRG 562
           L +++ I     +YY VIND  + ILH+F G
Sbjct: 223 LFILWAILIGLCLYYQVINDFWLSILHAFTG 253


>Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical
           protein R06A4.10b protein.
          Length = 511

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 305 SLLEKMLVLFFYFTCSITSFKL-LMKFFWWW 394
           +LLE++ ++ F F   +TS  + L+ FF+WW
Sbjct: 473 ALLERIFLITFLFIFVLTSIGINLIGFFYWW 503


>Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical
           protein R06A4.10a protein.
          Length = 514

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 305 SLLEKMLVLFFYFTCSITSFKL-LMKFFWWW 394
           +LLE++ ++ F F   +TS  + L+ FF+WW
Sbjct: 476 ALLERIFLITFLFIFVLTSIGINLIGFFYWW 506


>AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine
           receptor alternativevariant b protein.
          Length = 459

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 305 SLLEKMLVLFFYFTCSITSFKL-LMKFFWWW 394
           +LLE++ ++ F F   +TS  + L+ FF+WW
Sbjct: 421 ALLERIFLITFLFIFVLTSIGINLIGFFYWW 451


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
           receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 305 SLLEKMLVLFFYFTCSITSFKL-LMKFFWWW 394
           +LLE++ ++ F F   +TS  + L+ FF+WW
Sbjct: 515 ALLERIFLITFLFIFVLTSIGINLIGFFYWW 545


>Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.6 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 648 VVYIIKTPFTVYYHVINDHIIRILHSFRGHKRLLIMLIVHNSNCRNTI 505
           V+YII   ++ YY+    ++ +I  S  G    L MLIVH    + T+
Sbjct: 256 VIYIIFAIYSGYYNQAATNVAQIAVSCHGILSTLTMLIVHKPYRQETL 303


>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 324 NIFSRRLCLKNADYVRIFFCLGKVHTGVS--LPSSSLHDWCMT 202
           NI  R  C +  DY  +FFC    H G    LP+  L+ W  T
Sbjct: 356 NINDREQCPRFCDYYGLFFC-SLCHGGEKSILPARVLNQWSFT 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,250,504
Number of Sequences: 27780
Number of extensions: 334730
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)