Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00292
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    26   6.1  
SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28...    26   6.1  

>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 355 NYGYLMG-TLTKFSNCLKFINDHLINTKDIF 266
           N   L+G +L    NCLKF + H+I+T +I+
Sbjct: 343 NNTVLLGHSLNSDLNCLKFTHPHIIDTANIY 373


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 237 NTLKLLLAYKNISLVF-IKWSFMNLRQLENFVNVPI 341
           +T +LL    + ++ F I+ SF N R+  NF  VP+
Sbjct: 14  HTTQLLTVVNHRTIPFKIRGSFSNCRRYSNFATVPL 49


>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 401 EAQSTRIVKVHGFRKKLWVPNGH 333
           EA + +I K     +++W+PNGH
Sbjct: 38  EAGNNKIPKFGHKTRRVWIPNGH 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,376
Number of Sequences: 5004
Number of extensions: 53069
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)