Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00291
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...   108   1e-24
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    36   0.009
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    28   1.7  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   3.0  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    27   4.0  
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    26   5.3  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    26   5.3  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.3  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.3  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.3  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   9.3  

>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score =  108 bits (259), Expect = 1e-24
 Identities = 49/67 (73%), Positives = 56/67 (83%)
 Frame = +1

Query: 508 IIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKS 687
           IIKGRFQQKQIENVLRRYI EYVTC TC+SPDTIL K+ R+FF+ CE CGS  SV +IK+
Sbjct: 249 IIKGRFQQKQIENVLRRYIVEYVTCKTCKSPDTILTKENRIFFMTCEACGSVRSVQAIKT 308

Query: 688 GFQAVTG 708
           G+QA  G
Sbjct: 309 GYQAQIG 315



 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 46/87 (52%), Positives = 62/87 (71%)
 Frame = +2

Query: 257 DYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTLHRQ 436
           DY Y ELL R F ++R  NP + +G+K+K+ + PP V R G KKT FAN ++I K +HR 
Sbjct: 167 DYYYPELLNRFFTLLRTNNPEL-AGEKRKYTIVPPSVHREG-KKTIFANISDISKRMHRS 224

Query: 437 AKHLLDFLLAELGTSGSVDGNSQLLSK 517
             H++ FL AELGTSGSVDG+S+L+ K
Sbjct: 225 LDHVIQFLFAELGTSGSVDGSSRLIIK 251


>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 508 IIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTIL--QKDTRLFFLQCETCGSR 663
           I+ G     +++++L  +I+ +V C +C++P+T L   K  +     C+ CG R
Sbjct: 76  IVNGAHDAGKLQDLLDVFIRRFVLCASCQNPETELSINKKDQTISYDCKACGYR 129


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 423 LCIGRPSICWIFFWR-NWVLVVQWMETVNYYQRSLPTKTDRECFTSVYKRVCNMSYMP 593
           LC+G PSI  +  WR     VV   ET+ ++    P+      FT   K+     Y P
Sbjct: 13  LCVGSPSITTLLGWRLQQSSVVTCQETIMFFNAPEPS---TNVFTIQSKKFGTRKYRP 67


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 683 LMLATEQRDPHVSH*RKNNLVSFCKIVSG 597
           +ML T+Q +P++   R+  L  FC+ V G
Sbjct: 680 IMLNTDQHNPNIKSQRRMTLDDFCRNVRG 708


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 381 QRKPPLPILRKFVKLCIGRPSICWIFFWRNW 473
           +R P L I   F+K+C  RP I  +F W +W
Sbjct: 211 KRLPNLRIFSNFIKVC--RPLIYMLFMW-HW 238


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -1

Query: 438 ACRCKVLQISVKLAKEVFFVP 376
           AC+ ++L++ V+LAK+  FVP
Sbjct: 20  ACKKELLKLKVELAKQNLFVP 40


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = +1

Query: 376 WYKENLLCQFYGNL*NFASAGQAFVGFSSGGI-----GY*WFSGWKQSTIIKG 519
           WYKE+ LC+  G        G  F G+    +     G    SGW+   II G
Sbjct: 148 WYKESELCKRAGIFSASGLVGTMFAGYLQTAVHSSLNGKGGLSGWRWLFIIDG 200


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 195 VRGEDQENVEDEHGEWVGSDMITHMTNF*NEFLILCG 305
           V G D   + D H    G+ +I++ +N+  E+  L G
Sbjct: 132 VSGSDPVKMFDRHSSLNGTQIISYKSNYNEEWFTLIG 168


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 609 NCIRGAACMTCYILFYIPT*NILYLFLLEATF 514
           N  R A    C +LFY+   ++  LFL++  F
Sbjct: 15  NFFRNATLDQCLLLFYLSLFSLTNLFLIQKLF 46


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 486 EPLVPNSARRKSNKCLACRCKVLQISVKLAKEVFF 382
           EPL  N   +  NK L C+ K   +  KLA ++ +
Sbjct: 22  EPLEANLFGKLHNKLLICKAKKENLEKKLAYQMMY 56


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 484  FSGWKQSTIIKGRFQQKQIENVLRRYIKEY 573
            F G + + + +   Q+K+I N+LR  IK Y
Sbjct: 1403 FYGQRLNKLYRSSVQEKEILNLLRPLIKRY 1432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,272
Number of Sequences: 5004
Number of extensions: 63445
Number of successful extensions: 203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)