Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00291
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1699 - 28807154-28807218,28807324-28807466,28807570-288077...   119   3e-27
03_02_0903 + 12285874-12285918,12286715-12286820,12286906-122869...    77   2e-14
09_02_0462 + 9583558-9584910                                           42   4e-04
06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297...    29   4.2  
05_06_0033 + 25074301-25074393,25074680-25075203,25076367-250764...    29   4.2  
08_02_0239 - 14680013-14680291,14680560-14680649,14680654-146810...    28   7.3  

>07_03_1699 -
           28807154-28807218,28807324-28807466,28807570-28807715,
           28808142-28808242,28808314-28808365,28808483-28808538,
           28808616-28808721,28809314-28809358
          Length = 237

 Score =  119 bits (286), Expect = 3e-27
 Identities = 52/87 (59%), Positives = 72/87 (82%)
 Frame = +2

Query: 257 DYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTLHRQ 436
           DY+YDELL RVF+I+RE NP + +G +++ +MRPPQV+R GTKKT F NF ++CKT+HRQ
Sbjct: 115 DYNYDELLGRVFNILRENNPDL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQ 173

Query: 437 AKHLLDFLLAELGTSGSVDGNSQLLSK 517
            +H++ FLLAE+GTSGS+DG  +L+ K
Sbjct: 174 PEHVMMFLLAEMGTSGSLDGQQRLVIK 200



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 496 KQSTIIKGRFQQKQIENVLRRYI 564
           +Q  +IKGRF  K  E +LRRYI
Sbjct: 194 QQRLVIKGRFAPKNFEAILRRYI 216


>03_02_0903 +
           12285874-12285918,12286715-12286820,12286906-12286961,
           12287062-12287113,12287182-12287282,12287891-12288287,
           12288852-12288937,12289061-12289078
          Length = 286

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 33/56 (58%), Positives = 45/56 (80%)
 Frame = +2

Query: 257 DYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKT 424
           DY Y+ELL RVF+I+RE NP + +G +++ +MRPPQV+R GTKKT F NF ++CKT
Sbjct: 115 DYKYEELLGRVFNILRENNPDL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169



 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 32/51 (62%), Positives = 39/51 (76%)
 Frame = +1

Query: 496 KQSTIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCE 648
           +Q  +IKGRF  K  E +LRRYI EYV C+ C+SPDTIL K+ RLFFL+CE
Sbjct: 230 QQRLVIKGRFAPKNFEAILRRYINEYVICNGCKSPDTILSKENRLFFLRCE 280



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
 Frame = +2

Query: 380 TKKTSFANFTEIC---KTLHRQAKHLLDFLLAELGTSGSVDGNSQLLSK 517
           ++K ++   TEI      +HRQ +H++ FLLAE+GTSGS+DG  +L+ K
Sbjct: 188 SEKINYHELTEIIVYTSRMHRQPEHVMMFLLAEMGTSGSLDGQQRLVIK 236


>09_02_0462 + 9583558-9584910
          Length = 450

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 505 TIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDT-ILQKDTRLFFLQCETCG 657
           +++ G     ++  +L  +IK+YV C+ C +P+T +L   T++  L+C  CG
Sbjct: 76  SLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEVLISKTQMITLKCAACG 127


>06_01_0417 -
           2972877-2973876,2973946-2974851,2975823-2976616,
           2977887-2977977,2978305-2978384
          Length = 956

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
 Frame = -1

Query: 759 SLSTNFLCSLCTDGSTLASH------SLETRFNASH*TT 661
           S+  NF   LC +GSTLASH      S+ + +N+S  T+
Sbjct: 560 SIEENFASFLCDNGSTLASHDKIRRLSIHSSYNSSQKTS 598


>05_06_0033 +
           25074301-25074393,25074680-25075203,25076367-25076442,
           25076549-25076641,25077167-25077253,25077338-25078095,
           25078447-25078575,25079145-25079265
          Length = 626

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 272 ELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTLH-RQAKHL 448
           E+LE       E+   + S +KQ F++R P+V+ I  K+    N  +I + +  ++   L
Sbjct: 194 EILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGINGGKINRNIEFKETLFL 253

Query: 449 LDFL 460
            DF+
Sbjct: 254 SDFM 257


>08_02_0239 -
           14680013-14680291,14680560-14680649,14680654-14681047,
           14682052-14682137,14683327-14683465,14683470-14683585
          Length = 367

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 465 RNWVLVVQWMETVNYYQRSLPTKTDRECFTSVYKRVCNM 581
           RN + V+ W E V +    L   T REC    Y+R+C++
Sbjct: 231 RNVLTVIGWDERVTFVLDGLVQSTTREC----YQRLCDL 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,233,627
Number of Sequences: 37544
Number of extensions: 391580
Number of successful extensions: 1065
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)