Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00291
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_44198| Best HMM Match : PIG-L (HMM E-Value=1.4e-32)                 28   9.9  
SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037)                   28   9.9  
SB_20885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +1

Query: 508 IIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFL--QCETCG 657
           I+ G  Q  +++ +L  +I+ +V C +C +P+T+L  DTR   +   C+ CG
Sbjct: 76  IVNGAHQADKLQEILDGFIERFVLCSSCENPETVLVVDTRKERIGQNCKACG 127


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -2

Query: 329 QIPCLGSFPA*YQKLVLEVRHM--SNHITSNPFTVLIFHIF 213
           ++  LG+FP    K+VLEV+++    +  S+P T  + H+F
Sbjct: 26  KVEVLGNFPGIQSKIVLEVKNVRFQKNAESSPLTSALVHVF 66


>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 186 EEDVRGEDQENVEDEHGEWVGSD 254
           E++  GED+EN EDE  E  G D
Sbjct: 401 EDEENGEDEENGEDEENEENGED 423


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 582  TCYILFYIPT*NILYLFLLEATFDNS 505
            TC + FYI   NIL L LL A F+N+
Sbjct: 1155 TCILAFYILVANILLLNLLIAIFNNT 1180


>SB_44198| Best HMM Match : PIG-L (HMM E-Value=1.4e-32)
          Length = 233

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 704 VTAWKPDLMLATEQRDPHVSH*RKNNLVSFCKIVSG 597
           +  +KPD++L     D H+ H + + LVS    +SG
Sbjct: 92  IRQYKPDIVLCNAIDDRHIDHGKGSKLVSDACFLSG 127


>SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037)
          Length = 548

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 174 ELVTEEDVRGEDQENVEDEHG 236
           EL  EEDV+ +D +NV+D  G
Sbjct: 498 ELPEEEDVKSDDTQNVDDSTG 518


>SB_20885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 516 FDNS*LFPSTEPLVPNSARRKSNKCLACRCKV 421
           FD+S  F S  P +  S +R  N+C+ C C +
Sbjct: 81  FDSSSAFVSIVPQLFPSEQRTGNECVICACSM 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,361,096
Number of Sequences: 59808
Number of extensions: 463794
Number of successful extensions: 1773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)