Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00289
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 42 1e-04
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 38 0.001
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 28 1.1
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 4.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 4.6
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 4.6
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 26 6.1
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 25 8.1
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 583 EDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTSQETLLE 705
ED V +HFI++ + + YELDG +A P+NHG ++E E
Sbjct: 154 EDEV-YHFIAYTNINNVFYELDGLQAAPINHGSCTKEEFAE 193
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +2
Query: 347 NIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARGK 505
NIF+ KQ I+NAC T AL+ + N++D I+L + +F + +K L +G+
Sbjct: 71 NIFFAKQVINNACATQALLSVLLNHSDEIDLGT-TLSEFKDFSKTLPPELKGE 122
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +3
Query: 123 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPV 248
PLE+ P+VL +LQK+GV + ++ D+ L+ E ++PRPV
Sbjct: 4 PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPV 43
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +2
Query: 242 PCAFLMLLFPISDAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN 421
P L+ +FP S +K + IL K S + + Q I NACGTI L+H+V+N
Sbjct: 42 PVHALLFVFPSSGTKTIYKGSR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNG 95
Query: 422 TDIIELSDG-HMQKFLNEAKGLDATARGKLWKSLK 523
++++ ++ + A+G R KL + K
Sbjct: 96 ELRRKVNENDFIKSLIRTAEGSSIEERAKLIEDSK 130
Score = 31.5 bits (68), Expect = 0.12
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +1
Query: 505 IVEKSEGIINAHKELAQEGQTNTPSAED-PVNHHFISFVH----KDGALYELDGRKAFPV 669
++E S+ + H A S ED + HFI FV D YELDGR+ PV
Sbjct: 125 LIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYELDGRQEGPV 184
Query: 670 NHGPTSQETL 699
H + L
Sbjct: 185 QHSEIESDLL 194
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 517 SEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTSQET 696
S ++ ELA + TNT V ++++V + + L K F H P+S E
Sbjct: 126 SRALLEQFAELASK--TNTSHMIHQVYDQYLNYVVLESDFFSLQLPKIFHTFHNPSSDEA 183
Query: 697 LL 702
L+
Sbjct: 184 LI 185
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 580 AEDPVNHHFISFVHKDGALYELDGR 654
AE+ V HF+ KD LY++D R
Sbjct: 1099 AEESVKRHFLRLWLKDNGLYDVDIR 1123
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +1
Query: 529 INAHKELAQEGQTNTPSAEDPVNHHFIS 612
++A + L ++ +++T + E+PV+HH S
Sbjct: 337 LSARRALFEKKESSTKNVENPVSHHLKS 364
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +1
Query: 511 EKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFP 666
+ +G I K A + + + + ++H S VH+D L DG P
Sbjct: 43 DDEDGTIENSKVPASKSKVQKRNESEDISHSLPSIVHEDDKLVGSDGVSTTP 94
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Frame = +3
Query: 96 TEMATETLVPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSWV 236
++ +E +PLES PD L K + K+G W I V V PE W+
Sbjct: 318 SQHVSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECWL 372
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 437 LSDGHMQKFLNEAKGLDATARGKLWKSLKASLMLTRNWLKK 559
LS G +K NE++GL + +K S NWLKK
Sbjct: 282 LSQGKCEKMQNESRGLREIKNNNPCEEVKKS-----NWLKK 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,976
Number of Sequences: 5004
Number of extensions: 61158
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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