Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00289
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 63 2e-10
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 63 2e-10
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 56 3e-08
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 40 0.003
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 39 0.005
12_02_0999 - 25134828-25135113,25135479-25135535,25136171-251362... 29 3.6
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 4.8
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 29 4.8
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 28 8.4
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/66 (45%), Positives = 39/66 (59%)
Frame = +1
Query: 508 VEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTS 687
+EK + + AH A G T D V H+I FV DG LYELDG K P+NHGP+S
Sbjct: 260 LEKDDDMARAHLSAASAGDTKL---SDDVEEHYICFVECDGTLYELDGMKPGPINHGPSS 316
Query: 688 QETLLE 705
++LL+
Sbjct: 317 SKSLLQ 322
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 254 LMLLFPISDAYENHKKTEENEILSKGQEVSGNIFYMKQ--NISNACGTIALVHSVANNTD 427
L L++ +S +L G++ + +F++KQ ++ NACGTIAL+H+V N
Sbjct: 192 LYLIYTLSPTSVQDASNPSQHLLITGEKET--LFFIKQIESLGNACGTIALLHAVGNAYS 249
Query: 428 IIEL 439
I L
Sbjct: 250 EISL 253
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/67 (46%), Positives = 43/67 (64%)
Frame = +1
Query: 508 VEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTS 687
+E+ + + +AH A G T+ A VN HF+ F DG LYELDGRK+ P+ HGP+S
Sbjct: 251 LEEDDEMEDAHSVAASAGDTD---ANVEVNEHFVCFSCVDGELYELDGRKSQPICHGPSS 307
Query: 688 QETLLED 708
+TLL+D
Sbjct: 308 PDTLLQD 314
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 335 EVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATAR 499
++S +++ KQ + NACGT+ ++H++ N ++L +G + +F + +D R
Sbjct: 192 DLSKRVYFTKQTVGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQR 247
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 153 KFLQKLGVPN-KWNIVDVMGLDPETLSWVPRPVLS 254
+F+ LGV + DV GLD E L+ VP+PVL+
Sbjct: 65 QFMWGLGVAEGEAQFCDVYGLDDELLAMVPQPVLA 99
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/45 (53%), Positives = 35/45 (77%)
Frame = +3
Query: 120 VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLS 254
+PLE+NP+V+N+F++ LGVP + DV GLD E L+ VP+PVL+
Sbjct: 6 LPLEANPEVMNQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQPVLA 50
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +1
Query: 508 VEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTS 687
+E+ E + AH G T A+D V H++ F D ++ELDG + P++HGP+S
Sbjct: 134 LEEDEEMEKAHSVAVSAGDTE---AKDGVIEHYVCFSCVDDEIFELDGGNSQPISHGPSS 190
Query: 688 QETLLED 708
++LL+D
Sbjct: 191 PDSLLQD 197
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +2
Query: 242 PCAFLMLLFPISDAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN 421
P ++LL+P D + + + + SK ++S N+++ KQ I NACGT+ ++H++ N
Sbjct: 47 PVLAVILLYP-QDRKKESVASPSSTVESK--KLSKNVYFTKQTIGNACGTVGIIHAIGNA 103
Query: 422 TDIIELSDG-HMQKFLNEAKGLDATAR 499
I+L +G + +F + +D R
Sbjct: 104 LSRIKLVEGSYFDRFYKQTADMDPAQR 130
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1
Query: 577 SAEDPVNHHFISFVHKDGALYELDGRKAFPVNHG 678
S +D +HFIS+V DG LYELDG K P++ G
Sbjct: 200 SVKDDDVYHFISYVPVDGVLYELDGLKEGPISLG 233
Score = 34.3 bits (75), Expect = 0.097
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +2
Query: 347 NIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARG 502
N+F+ KQ I+NAC T A+V SV N+ I LS+ ++K AK L +G
Sbjct: 123 NLFFAKQIINNACATQAIV-SVLLNSPGITLSE-ELKKLKEFAKDLPPDLKG 172
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 508 VEKSEGIINAHKELAQE----GQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNH 675
+ S+ I AH A+ + +D +HFIS++ +G LYELDG K P++
Sbjct: 122 INNSDSIRTAHNSFARPEPFVSDEQRAAGKDDEVYHFISYLPFEGVLYELDGLKEGPISL 181
Query: 676 GPTS 687
G S
Sbjct: 182 GQCS 185
>12_02_0999 -
25134828-25135113,25135479-25135535,25136171-25136296,
25136399-25137289,25137379-25137533
Length = 504
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 568 NTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTSQE 693
++PSA ++ F+S + DG++ L+G+ F + GP + +
Sbjct: 273 DSPSATGTMSSAFMSSLSMDGSVASLEGKPPFHLISGPVASD 314
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 266 FPISDAYENHKKTEENEIL-SKGQEVSGNIFYMKQNISNACGTIALVHSVANN 421
+ +SD + +++ EE E+L ++ +E + + +N+S+ C T+ + V N+
Sbjct: 2692 YRVSDGKDPYEQMEEEELLRNRLEESEQDRSKLAENLSSLCATVLKIAGVRNH 2744
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 226 SVSGSSPMTSTIFHLFGTPSFCKNLFRTSG 137
S S+P +S++F TP+ NLF TSG
Sbjct: 230 STPASAPSSSSLFSTPTTPTLSSNLFGTSG 259
>05_01_0168 +
1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 609 DKMMVDGIFSTWCICLAFLSQFLVSINDAFRLF 511
D + DG+ +WCI L FL+S ++ F
Sbjct: 881 DSLFGDGLIPSWCIYLVETCPFLLSFEARWKYF 913
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,489
Number of Sequences: 37544
Number of extensions: 359194
Number of successful extensions: 772
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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