Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00289
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               43   3e-04
SB_46690| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  

>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +1

Query: 544 ELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTSQE 693
           +L  E   +  SA      HF+S+V   G L+ELDG K +P++HGP  ++
Sbjct: 133 KLLPEKTNSISSARALEAFHFVSYVPIKGRLFELDGLKPYPIDHGPWGEQ 182



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 35/136 (25%), Positives = 68/136 (50%)
 Frame = +2

Query: 251 FLMLLFPISDAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDI 430
           F+ L   I +     K    +E   + +E+  +IF+ +Q I N+C T AL+ SV  N   
Sbjct: 30  FIFLFKWIEERRSRRKIQHIDESFVENEEIVNDIFFAQQVIPNSCATHALL-SVLLNCPH 88

Query: 431 IELSDGHMQKFLNEAKGLDATARGKLWKSLKASLMLTRNWLKKAKQIHQVLKIPSTIILS 610
           I+L + ++ K  + +K  +   +G +  +L   L ++ N  K A+   ++L   +  I S
Sbjct: 89  IDLGE-NVSKLKDFSKNFNPENKGYVIGNL-PELAMSHN--KFARPEPKLLPEKTNSISS 144

Query: 611 ALSIKMEHCMS*MAVK 658
           A +++  H +S + +K
Sbjct: 145 ARALEAFHFVSYVPIK 160


>SB_46690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 548 WLKKAKQIHQVLKIPSTIILSALSIKMEHCM 640
           W++KAKQ++  L  P  I +++ +I++ H +
Sbjct: 50  WIEKAKQVYSTLSSPKKIFIASDNIEVIHSL 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,497,749
Number of Sequences: 59808
Number of extensions: 424211
Number of successful extensions: 950
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)