Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00289
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin c-t...    62   3e-10
AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin c-t...    55   6e-08
AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin c-t...    54   8e-08
Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U88308-10|AAB42326.2|  268|Caenorhabditis elegans Hypothetical p...    32   0.35 
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z66565-2|CAA91478.2|  502|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 1 protein.
          Length = 216

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
 Frame = +2

Query: 284 YENHKKTEE--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQ 457
           +  +KK +E    I  + +    ++F+MKQ ISNACGT AL HS+AN  D I L DG   
Sbjct: 51  FPEYKKVDEIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFA 110

Query: 458 KFLNEAK 478
           K+L EAK
Sbjct: 111 KWLAEAK 117



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 29/57 (50%), Positives = 36/57 (63%)
 Frame = +1

Query: 538 HKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTSQETLLED 708
           H   A +GQT  PS +  V HHFI FV K+G LYE+D R+ F    GPTS  TL++D
Sbjct: 138 HAAAATDGQT-APSGD--VEHHFICFVGKNGILYEIDSRRPFAREIGPTSDATLVKD 191



 Score = 34.7 bits (76), Expect = 0.066
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +3

Query: 123 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETL 227
           PLESNP V+N  ++K+GV      VDV+  D E++
Sbjct: 7   PLESNPSVINPMIEKMGVSGV-KTVDVLFFDDESI 40


>AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 3 protein.
          Length = 227

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 25/61 (40%), Positives = 40/61 (65%)
 Frame = +1

Query: 526 IINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTSQETLLE 705
           +  AH+E A+EG+T      D V++HFI++V+K+G LYE+D    FP   G T+  T+++
Sbjct: 145 LAEAHEETAEEGETEQ---SDHVDYHFITYVNKNGQLYEIDSCAPFPRPLGATTDSTMIK 201

Query: 706 D 708
           D
Sbjct: 202 D 202



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = +2

Query: 227 FVGTSPCAFLMLLFPISDAYENHKKTEENEILSKGQEVSGNIFYMKQN--ISNACGTIAL 400
           FV T   A L+L FP ++A E   K  E E+   G++  G +F+M Q+  I NACGT AL
Sbjct: 46  FVPTPQLA-LILCFPSAEAREFLSKQYE-EVEKNGEKPEG-VFFMNQSEEIGNACGTFAL 102

Query: 401 VHSVANNTDIIELSDGHMQKFLNEAKGLDATARGKL 508
            HS+AN  + + L  G   K+  +AK ++   R  L
Sbjct: 103 FHSLANLENRVNLGKGKFAKWYEKAKLVNEDERSDL 138



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +3

Query: 126 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLS 254
           LESNP+ +N FL+K+G+      VDV   D E L +VP P L+
Sbjct: 12  LESNPETINPFLKKIGITG-LECVDVYSFDDEMLQFVPTPQLA 53


>AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 2 protein.
          Length = 249

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 25/61 (40%), Positives = 39/61 (63%)
 Frame = +1

Query: 526 IINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTSQETLLE 705
           +  AHKE A+EG+T  P   + V +HFI++V+K+G L+E+D    FP   G T+  T++ 
Sbjct: 144 LAEAHKETAEEGETEHP---EHVAYHFITYVNKNGQLFEIDSCSPFPRPLGATTDSTMIR 200

Query: 706 D 708
           D
Sbjct: 201 D 201



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
 Frame = +2

Query: 239 SPCAFLMLLFPISDAYENHKKTEENEILSKGQEVSGNIFYM--KQNISNACGTIALVHSV 412
           +P   L+L FP S   E   K  E E+   G++  G IF+M  K+ I +ACGT +L HS+
Sbjct: 48  TPQLALILCFPSSGVREFRAKQYE-EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSL 105

Query: 413 ANNTDIIELSDGHMQKFLNEAK 478
           AN  + + L +G   K+  +AK
Sbjct: 106 ANLENRVNLGNGKFSKWFEKAK 127



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = +3

Query: 126 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLS 254
           LESNP+ +N FL K+GV      VDV   D E L ++P P L+
Sbjct: 11  LESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLA 52


>Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical
           protein C08B11.7 protein.
          Length = 321

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 347 NIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARG 502
           NIF+  Q I NAC T AL++ + N  D        + ++   A  LD   RG
Sbjct: 71  NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDLDPNTRG 122



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 508 VEKSEGIINAHKELAQEG--QTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPV 669
           +  SE I   H   +++   + +    E   N+HF+++V     +YELDG +  P+
Sbjct: 125 LSNSEEIRTVHNSFSRQTLFELDIKGGESEDNYHFVTYVPIGNKVYELDGLRELPL 180


>U88308-10|AAB42326.2|  268|Caenorhabditis elegans Hypothetical
           protein C32E8.9 protein.
          Length = 268

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 496 SW*IVEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHK 624
           SW   E  EGI+   + LA  G+ N  SAE+  +  ++ +V+K
Sbjct: 162 SWGGAEYMEGIMGRGRALAAMGRANVMSAEEAKDQGYVDYVYK 204


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
 Frame = +2

Query: 278 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 445
           DA++   K    E+L  G  + G++   K+  S    T  +V  + N     TD   L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373

Query: 446 --GHMQKFLNEA-KGLDATARGK 505
             GHM+  L +  K LD  +R K
Sbjct: 374 EMGHMESTLADIYKNLDGASRHK 396


>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
 Frame = +2

Query: 278 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 445
           DA++   K    E+L  G  + G++   K+  S    T  +V  + N     TD   L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359

Query: 446 --GHMQKFLNEA-KGLDATARGK 505
             GHM+  L +  K LD  +R K
Sbjct: 360 EMGHMESTLADIYKNLDGASRHK 382


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
 Frame = +2

Query: 278 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 445
           DA++   K    E+L  G  + G++   K+  S    T  +V  + N     TD   L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362

Query: 446 --GHMQKFLNEA-KGLDATARGK 505
             GHM+  L +  K LD  +R K
Sbjct: 363 EMGHMESTLADIYKNLDGASRHK 385


>Z66565-2|CAA91478.2|  502|Caenorhabditis elegans Hypothetical
           protein T04F8.2 protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -1

Query: 368 FVSYRKYFQKLLALWTESHFLQFFCDFRKHQKLGKVALRKHRARYP---RKRFRIKSHDI 198
           FVS    F  +LAL T S+F+   C    HQ   K + RK  A Y    R+  R  SH+ 
Sbjct: 415 FVSQLWRFSLILALTTFSNFVALSC--LVHQFWPKSSYRKFFADYTNGHRRLGRDDSHEF 472

Query: 197 YNIP-FVWYAE 168
            +   F++YAE
Sbjct: 473 NDYDNFLFYAE 483


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 624 FMDKADKMMVDGIFST--WCICLAF 556
           F+D  D M+VDG  S   WC C  F
Sbjct: 116 FIDMCDDMVVDGSISVDEWCDCFTF 140


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 624 FMDKADKMMVDGIFST--WCICLAF 556
           F+D  D M+VDG  S   WC C  F
Sbjct: 124 FIDMCDDMVVDGSISVDEWCDCFTF 148


>Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical
           protein T07D4.4c protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 96  TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 224
           TE A E  VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 162 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 203


>Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical
           protein T07D4.4b protein.
          Length = 638

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 96  TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 224
           TE A E  VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 187 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 228


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 96  TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 224
           TE A E  VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 571 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 612


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,946
Number of Sequences: 27780
Number of extensions: 333700
Number of successful extensions: 891
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)