Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00288X
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   0.82 
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   3.3  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   3.3  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   5.8  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   5.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   7.7  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    24   7.7  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    24   7.7  

>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 82  FMSTIYKKIVNFQIDGT*RKV*PKIHSLLEHILL 183
           F + + K I  F  +G  +    K+HSLL+HI+L
Sbjct: 583 FNAEMLKPIQKFGYEGPGKLAFKKVHSLLKHIML 616


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 205 LHQNIEKNDCFKFISCNRQSTAISTFARYNHEQKNPMIKTWNIMTKSNTRF 357
           L+  + KND    +     ST +    RY  E  N M + ++ + KS   F
Sbjct: 243 LYMPLLKNDLGSIVDIATMSTRMQHLVRYLEEVLNAMYEEFDNVFKSEASF 293


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 214 NIEKNDCFKFISCNRQSTAISTFARYNHEQKNPMIK 321
           +I+++   K + CN+    +    R ++EQ+N +IK
Sbjct: 660 DIQRDLAKKALECNKLENRVYDLVRSSYEQRNFLIK 695


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 401 IPPPIITIPVFSGYENLVLDFVIIFQVFIMGFFC 300
           +PP  + IP  S +EN +  FV  F   ++   C
Sbjct: 529 LPPKKVDIPFKSDFENALNGFVATFSEMLIQTQC 562


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 120 LEVNNFFVDSTHK*KAF 70
           ++V++FF+DS H+ KAF
Sbjct: 237 MKVSSFFMDSIHELKAF 253


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 251 HEINLKQSFFSIF*CSTYLMYVYNSICSSKEC 156
           + +N+ QSF      ST+L Y+++   S K C
Sbjct: 336 NSVNIAQSFLEPQTRSTFLRYLFSDEVSVKVC 367


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 256 RQSTAISTFARYNHEQKNPMIKTWNIMTKSNTR 354
           +Q T  S F R   E  NP  + W I+  +  R
Sbjct: 390 QQCTYASVFTRVEDELDNPETRGWRIVDFARAR 422


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 369 FWVRKSCIR-FRHYIPSFYH 313
           F V K+ ++ F HY+PS+YH
Sbjct: 223 FSVDKNQLKMFVHYLPSYYH 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,205
Number of Sequences: 5004
Number of extensions: 33694
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)