Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00288X
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24522| Best HMM Match : DS (HMM E-Value=0)                          29   1.4  
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)               29   1.9  
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.5  

>SB_24522| Best HMM Match : DS (HMM E-Value=0)
          Length = 340

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 283 ARYNHEQKNPMIKT--WNIMTKSNTRFSYPENTGIVIIGGGI 402
           A Y H  +NP +K      +   N    + +NTGI+I+GGG+
Sbjct: 244 AIYFHSYRNPGLKLDIAEDVRLVNNHAVFSKNTGIIILGGGL 285


>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
          Length = 667

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 402 YTTTYYNNTSIFWVRKSCIRFRHYIPSFYHGVFLF 298
           Y  +  N+    + +K+CIRFR  +PS  +G+ +F
Sbjct: 273 YAVSVINSAIAEYNQKTCIRFRPRVPSDKYGLKIF 307


>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 393 TYYNNTSIFWVRKSCIRFRHYIPSFYHGVFLFMIIASKC*NCCRLTIARNKLETIIFFY 217
           T Y +  +FW   + +R+   +P    GVF    +      CC+L IAR+ +   + F+
Sbjct: 68  TAYGSDPVFW-NSTRLRYVKGVPGITSGVFTVPHV------CCKLCIARDNIIPFLNFF 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,443,958
Number of Sequences: 59808
Number of extensions: 209885
Number of successful extensions: 338
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)