Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00288X
         (402 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ347149-1|CAC87548.1|   89|Homo sapiens immunoglobulin heavy ch...    30   3.3  
AK097987-1|BAC05210.1|  132|Homo sapiens protein ( Homo sapiens ...    29   7.7  

>AJ347149-1|CAC87548.1|   89|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 89

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 287 RANVEIAVD*RLHEINLKQSFFSIF*CSTYLMYVYNSICSSKECIFG*TFLYVPSIW 117
           ++ V I+VD   ++ +LK S  S+    T + Y     CSS  C  G  + Y   +W
Sbjct: 35  KSRVTISVDTSKNQFSLKLS--SVTAADTAVYYCARDSCSSTSCYTGLYYYYYMDVW 89


>AK097987-1|BAC05210.1|  132|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40668 fis, clone THYMU2020830. ).
          Length = 132

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 226 FFLYFDVVLI*CMFTIVYVLVKSVF 152
           FFLYF+++ + C+F IV+ ++  ++
Sbjct: 108 FFLYFNLIPLKCLFFIVFFIIYIIY 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,744,290
Number of Sequences: 237096
Number of extensions: 948571
Number of successful extensions: 1203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)