Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00288X
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical...    28   2.9  
U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeas...    27   5.0  
DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar prot...    27   5.0  
AF077536-11|AAK31413.1|  217|Caenorhabditis elegans Hypothetical...    27   5.0  
Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical
           protein C16D6.2 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 384 NNTSIFWVRKSCIRFRHYIPSFYHGVFLFMIIASKC*N-CCRLTIARNK-LETIIFFYIL 211
           N  S  W+ +  +  R YI   +  ++L +I A    N C  L I RNK L+T+   +IL
Sbjct: 8   NLNSELWLYREDLSSRWYIMLVFAFLYLIIIAAGIIGNSCVILAITRNKSLQTVPNLFIL 67


>AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical
           protein Y60A3A.6 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = -2

Query: 392 PIITIPVFSGYE---NLVLDFVIIFQVFIMGFFCS*L*RANVEIAVD*RLHEINLKQS 228
           P++T+PV SGY    +LVL      QV+I G  C  +   +V I  + R H++ +  S
Sbjct: 72  PVLTLPVCSGYPLGFSLVLGIPTSVQVYI-GVSCVGVIGVSVLIFFESRYHQLIIGSS 128


>U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 35 protein.
          Length = 821

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 60  IFCKKLSIYEYYLQKNC*LPNRRNIKESLAK 152
           +F + LS Y YY + NC   N  +I+E +A+
Sbjct: 737 LFIQLLSAYTYYYEDNCSEVNVDHIEELIAR 767


>DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar protein
           sorting factor protein.
          Length = 826

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 60  IFCKKLSIYEYYLQKNC*LPNRRNIKESLAK 152
           +F + LS Y YY + NC   N  +I+E +A+
Sbjct: 742 LFIQLLSAYTYYYEDNCSEVNVDHIEELIAR 772


>AF077536-11|AAK31413.1|  217|Caenorhabditis elegans Hypothetical
           protein C16A11.8 protein.
          Length = 217

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 202 VLHQNIEKNDCFKFISCNRQSTAISTFARYNHEQKN 309
           V+  N+  ++     +CNR+ + +STFA Y+ EQK+
Sbjct: 67  VVTVNVSVSEAAAQEACNREGSVLSTFACYD-EQKH 101


>Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical
           protein C47A4.2c protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 63  FCKKLSIYEYYLQK 104
           FCKK+  Y+YY+ K
Sbjct: 178 FCKKMDFYKYYVSK 191


>Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical
           protein C47A4.2b protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 63  FCKKLSIYEYYLQK 104
           FCKK+  Y+YY+ K
Sbjct: 246 FCKKMDFYKYYVSK 259


>Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical
           protein C47A4.2a protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 63  FCKKLSIYEYYLQK 104
           FCKK+  Y+YY+ K
Sbjct: 240 FCKKMDFYKYYVSK 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,183,858
Number of Sequences: 27780
Number of extensions: 183659
Number of successful extensions: 454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)