Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00288X
         (402 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    27   3.5  
At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquino...    27   3.5  
At5g57270.3 68418.m07155 expressed protein contains Pfam profile...    27   4.7  
At5g57270.2 68418.m07154 expressed protein contains Pfam profile...    27   4.7  
At5g57270.1 68418.m07153 expressed protein contains Pfam profile...    27   4.7  
At4g30060.1 68417.m04276 expressed protein contains Pfam profile...    27   4.7  
At3g18090.1 68416.m02300 DNA-directed RNA polymerase family prot...    27   4.7  
At1g76130.1 68414.m08841 alpha-amylase, putative / 1,4-alpha-D-g...    27   6.2  
At1g11060.1 68414.m01267 expressed protein                             26   8.2  

>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 12  KILKNYIS*TVSFRNLIFCKKLSIYEYYLQ 101
           KI K YI   +  RN+  C+KL  YE YL+
Sbjct: 414 KIFKKYIEIELQLRNIDRCRKL--YERYLE 441


>At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquinone
           oxidoreductase family protein contains Pfam profile:
           PF05187 Electron transfer flavoprotein-ubiquinone 
           oxidoreductase
          Length = 633

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 393 TYYNNTSIFWVRKSCIRFRHYIPSFYHGVFLFMIIAS 283
           TY++N    WV K     R+Y P+F +G+   + I++
Sbjct: 453 TYWDNLRDSWVWKELYAARNYRPAFEYGLLPGLAISA 489


>At5g57270.3 68418.m07155 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 388

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 357 KSCIRFRHYIPSFYH 313
           K+CI   HY+P+F+H
Sbjct: 275 KNCIADEHYLPTFFH 289


>At5g57270.2 68418.m07154 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 388

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 357 KSCIRFRHYIPSFYH 313
           K+CI   HY+P+F+H
Sbjct: 275 KNCIADEHYLPTFFH 289


>At5g57270.1 68418.m07153 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 388

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 357 KSCIRFRHYIPSFYH 313
           K+CI   HY+P+F+H
Sbjct: 275 KNCIADEHYLPTFFH 289


>At4g30060.1 68417.m04276 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 401

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 357 KSCIRFRHYIPSFYH 313
           K+CI   HY+P+F+H
Sbjct: 286 KNCIADEHYLPTFFH 300


>At3g18090.1 68416.m02300 DNA-directed RNA polymerase family protein
           similar to SP|P38420 DNA-directed RNA polymerase II 135
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
           2) {Arabidopsis thaliana}; contains Pfam profiles
           PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
           polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
           domain 3, PF04566: RNA polymerase Rpb2 domain 4,
           PF04567: RNA polymerase Rpb2 domain 5
          Length = 1038

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 123 DLEVNNFFVDSTHK*KAFCKILSCGNSQFT 34
           D  + N  + S H+  A C+   CGN+  T
Sbjct: 173 DASITNSLIASIHEADAVCEAFRCGNNALT 202


>At1g76130.1 68414.m08841 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative strong
           similarity to alpha-amylase GI:7532799 from [Malus x
           domestica];contains Pfam profile PF00128: Alpha amylase,
           catalytic domain
          Length = 413

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 397 HHLL*QYQYFLGTKILY*ISSLYSKFLSWGFSVHDYSEQMLKLL 266
           HH++  Y Y L    +  +   Y  F  WG S+HD   Q++KL+
Sbjct: 313 HHVMEGYAYILTHPGIPCV--FYDHFYDWGSSIHD---QIVKLI 351


>At1g11060.1 68414.m01267 expressed protein 
          Length = 930

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 325 WNIMTKSNTRFSYPENTGIV 384
           W+  ++SN R  YP+N G+V
Sbjct: 115 WHSSSRSNFREDYPQNGGVV 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,231,840
Number of Sequences: 28952
Number of extensions: 151371
Number of successful extensions: 286
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)