Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00287
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)                   31   1.3  
SB_22902| Best HMM Match : Arm (HMM E-Value=0.41)                      28   6.7  
SB_2014| Best HMM Match : MAM (HMM E-Value=0)                          28   8.9  

>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
          Length = 280

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 529 LQHGTLSQHFTLPENLFLSQFSAFFLRNIREHLGED 636
           L  G + Q F++ EN+ LSQ+S  F   + +HL  D
Sbjct: 146 LSVGGIRQQFSMAENIQLSQYSYKFFTEVSKHLTVD 181


>SB_22902| Best HMM Match : Arm (HMM E-Value=0.41)
          Length = 147

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 434 AATAYWLKRRAGDGLSVVV--IEKDFSINKLKGTFSMEHF 547
           AA A +LK    DGLSV++  +  D    KLK TF M HF
Sbjct: 8   AAEAVFLKH---DGLSVLMRAMHSDTEKLKLKATFMMRHF 44


>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
          Length = 2282

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 448 LVKAQSW*WSLSSGHRKRFFHKQAQRHLQHGTLSQHFTLP 567
           ++K  SW W + S ++ R+F   + RH    T+  H  LP
Sbjct: 806 ILKGGSWSWYIDSSNKIRYFDGNSDRH----TVVSHRLLP 841


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,027
Number of Sequences: 59808
Number of extensions: 348777
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)