Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00287
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.9  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   5.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.0  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 225 YLMYVYNSICSSKECIFG*TFLYVPSIWKLTI 130
           Y + +YN+   S + +   TF+Y P   K TI
Sbjct: 208 YALIIYNNADDSFQRLTSSTFVYDPRYTKYTI 239


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 350 WNIMTKSNTRFSYPENTDIV 409
           W I+    TRF YP+   ++
Sbjct: 645 WMIIEPPGTRFFYPDRKQVI 664


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 350 WNIMTKSNTRFSYPENTDIV 409
           W I+    TRF YP+   ++
Sbjct: 735 WMIIEPPGTRFFYPDRKQVI 754


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = +2

Query: 509 INKLKGTFSMEHFHNISHYQKICSYRNSV 595
           I+ L   +   +++N ++Y K   Y+N +
Sbjct: 82  ISSLSNNYKYSNYNNYNNYNKKLYYKNYI 110


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 536 MEHFHNISHYQKICSYRNSVHSSLETLEN 622
           +++ H     + IC+    V+SSL +L N
Sbjct: 22  IQNVHTRPSKEPICNICKRVYSSLNSLRN 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,046
Number of Sequences: 438
Number of extensions: 3732
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)