Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00287
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19190.1 68416.m02436 expressed protein                             31   0.78 
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    31   0.78 
At5g25550.1 68418.m03040 leucine-rich repeat family protein / ex...    31   1.0  
At5g63300.1 68418.m07944 ribosomal protein S21 family protein          27   9.6  
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    27   9.6  

>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 485  VVIEKDFSINKLKGTFSMEHFHNISHYQKICS 580
            +++  DF ++KL GT+S EH H  S Y K+ +
Sbjct: 1129 LLLSVDFDLSKLGGTYSSEHLHE-SGYVKVAN 1159


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 559 TLPENLFLSQFSAFFLRNIREHLGEDINVEYCPTGSLVLASND 687
           ++P  LF  +  A FL + R   G   N+   P  +LVLA ND
Sbjct: 228 SIPSKLFDKELDAIFLNHNRFMFGIPENMGNSPVSALVLADND 270


>At5g25550.1 68418.m03040 leucine-rich repeat family protein /
           extensin family protein similar to leucine-rich
           repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana];
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 433

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 562 LPENLFLSQFSAFFLRNIREHLGEDINVEYCPTGSLVLASNDY 690
           LPE+LF     A FL + R      +N+   P   LVLASN +
Sbjct: 187 LPESLFDKDLDALFLNSNRFRSKIPVNMGNSPVSVLVLASNRF 229


>At5g63300.1 68418.m07944 ribosomal protein S21 family protein 
          Length = 217

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +1

Query: 478 LSSGHRKRFFHKQAQRHLQHGTLSQHFTLPENLFLSQFSAFFLRNIREHLGEDINVEYCP 657
           L    R+RFF    ++  +    +       + F   FS+FF    R+ LGE  ++++  
Sbjct: 109 LQESRRRRFFESSLEKKTRKTKEAAKKYRKRSDFFFTFSSFF----RKTLGEVESIDFDF 164

Query: 658 TGSLVLASNDY 690
           TG   L  N Y
Sbjct: 165 TGDQTLNQNHY 175


>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 37  KILKNYIS*TVSFRNLIFCKKLSIYEYYLQ 126
           KI K YI   +  RN+  C+KL  YE YL+
Sbjct: 414 KIFKKYIEIELQLRNIDRCRKL--YERYLE 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,713,360
Number of Sequences: 28952
Number of extensions: 254533
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)