Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00286
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 109 2e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 104 7e-23
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 81 1e-15
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 71 1e-12
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 38 0.009
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 1.0
SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 30 1.8
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11) 28 7.2
SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35) 28 7.2
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 109 bits (263), Expect = 2e-24
Identities = 49/52 (94%), Positives = 50/52 (96%)
Frame = +1
Query: 100 MGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIK 255
MGKGSFKYAWVLDKLKAERE GITIDIALWKFET KYYVT+IDAPGHRDFIK
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIK 52
Score = 102 bits (245), Expect = 3e-22
Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 6/77 (7%)
Frame = +2
Query: 551 NMLELSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 712
NM+ +++MPWFK W +ER KE A G L E LD+ILPP+RP+ PLRLPLQDV
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112
Query: 713 YKIGGIGTVPVGRVENG 763
YKIGGIGTVPVGRVE G
Sbjct: 113 YKIGGIGTVPVGRVETG 129
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 104 bits (250), Expect = 7e-23
Identities = 46/88 (52%), Positives = 65/88 (73%)
Frame = +3
Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 425
F NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L++ VNKMD
Sbjct: 235 FVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDD 294
Query: 426 TEPPYSEPRFEEIKKEVSSYIKKIGYNP 509
++E R+EEIK +++ ++KK+G+NP
Sbjct: 295 PTVKWNEERYEEIKVKLTPFLKKVGFNP 322
Score = 71.3 bits (167), Expect = 8e-13
Identities = 28/71 (39%), Positives = 48/71 (67%)
Frame = +1
Query: 40 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVT 219
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+ G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 220 IIDAPGHRDFI 252
++DAPGH+ F+
Sbjct: 226 LLDAPGHKSFV 236
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/59 (64%), Positives = 45/59 (76%)
Frame = +3
Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 422
F NMITG +QAD A+L+V A TGEFEAG GQTREHA+L +LGV QLIV +NK+D
Sbjct: 26 FIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84
Score = 37.9 bits (84), Expect = 0.009
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1
Query: 172 IDIALWKFETSKYYVTIIDAPGHRDFI 252
+D+ L +F+T +T++DAPGH+DFI
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFI 27
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 70.9 bits (166), Expect = 1e-12
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 102
VDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 16 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +1
Query: 4 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIA 183
D+GK+T T L+ G I +EA + K D ++ ER+ GI++ +
Sbjct: 20 DAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGISVATS 70
Query: 184 LWKFETSKYYVTIIDAPGHRDF 249
+ F + I+D PGH+DF
Sbjct: 71 VLAFNYRDKKINILDTPGHKDF 92
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/100 (22%), Positives = 44/100 (44%)
Frame = +3
Query: 258 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 437
M+ G + D A+L++A QT EH + +K +++ NK+D +
Sbjct: 81 MLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKES 134
Query: 438 YSEPRFEEIKKEVSSYIKKIGYNPLLSLSCPFLDGTETTC 557
++ ++++I K V I + P++ +S E C
Sbjct: 135 QAKDQYDQILKFVQGTIAEGA--PVIPISAQLKYNIEVIC 172
>SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/98 (24%), Positives = 45/98 (45%)
Frame = +1
Query: 55 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAP 234
+D + + FE+E E K + A + + RE ++ +++KYY+T +D
Sbjct: 110 VDPKNVTTFEREYYEATKSLWSDAGMQECYDRRREYQLS--------DSAKYYLTDLDRL 161
Query: 235 GHRDFIKT*SQEPLRLIALCSS*LPVPVNSKLVSLRTV 348
D++ T Q+ LR A S + P + + + R V
Sbjct: 162 AKPDYLPT-EQDVLRARAPTSGIIEYPFDLETIIFRMV 198
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Frame = -1
Query: 487 MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 335
+Y+D S L+S N L ++E IL TPT + + K C + P
Sbjct: 796 LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855
Query: 334 IPASNSPVPAAT 299
+ NSP+P+ T
Sbjct: 856 VTNGNSPIPSGT 867
>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
Length = 1496
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = -3
Query: 305 SYDEHSAISLRGSCDHVLMKSLCPGASMMVT*YLLVSNFQRAISIVIPSSRSAF---SLS 135
+Y+ + + ++ +C + K+ C M +T L+SN AI+ I +S ++F SL+
Sbjct: 1299 NYEVAAVVKVKTAC---MTKTCCSQWGMAITRITLISN---AITFSILASHTSFGTESLA 1352
Query: 134 NTQAYLKDPLPISWAS 87
+ K+PL +WA+
Sbjct: 1353 PSPTPSKEPLGGTWAN 1368
>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
Length = 848
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 545 GDNMLELSTKMPWFKGWQVERKEGKADGK 631
GDN ++S+++PWF Q ++ + KAD K
Sbjct: 191 GDNTSKVSSEVPWFN--QRQKPKDKADSK 217
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 294 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 470
++VAA EF A ++KNG ++ F G + QL +G + M+ TE P P FE++K
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424
Query: 471 EVSS 482
S
Sbjct: 425 RTVS 428
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 539 WHGDNMLELSTKMPWFKGWQVERKE 613
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,687,255
Number of Sequences: 59808
Number of extensions: 601461
Number of successful extensions: 1651
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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