Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00285
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 126 1e-29
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 90 2e-18
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 84 1e-16
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 42 5e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 32 0.44
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.44
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 31 1.0
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 1.3
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.3
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7) 29 4.1
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1) 28 7.2
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_36443| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 126 bits (305), Expect = 1e-29
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 429
GKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 2 GKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 31.5 bits (68), Expect = 0.77
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 702 NMLEPSTKMPWFKGWQVER 758
NM+ +++MPWFK W +ER
Sbjct: 53 NMITGTSQMPWFKQWTIER 71
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.5 bits (232), Expect = 1e-20
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMV 256
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E++
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVL 50
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 90.2 bits (214), Expect = 2e-18
Identities = 39/99 (39%), Positives = 63/99 (63%)
Frame = +1
Query: 211 QTYHREVREGGPGNGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 390
+ Y RE +E + ++ +W LD + ER++G T+++ F+T + T++DAPGH
Sbjct: 177 EKYEREAKE----KNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGH 232
Query: 391 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 507
+ F+ NMI+G +QAD VL+++A GEFE G + GQTR
Sbjct: 233 KSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTR 271
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/50 (50%), Positives = 38/50 (76%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 659
HA+LA T GVK L++ VNKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 273 HAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 191 YKCGGIDKRTIEKFEKEAQE 250
Y G +DKRT+EK+E+EA+E
Sbjct: 166 YLTGQVDKRTLEKYEREAKE 185
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/62 (58%), Positives = 47/62 (75%)
Frame = +1
Query: 322 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 501
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 502 TR 507
TR
Sbjct: 61 TR 62
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 510 HALLAFTLGVKQLIVGVNKMD 572
HA+L +LGV QLIV +NK+D
Sbjct: 64 HAILVRSLGVTQLIVAINKLD 84
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +1
Query: 286 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 465
D ++ ER+RGI++ ++ F + I+D PGH+DF ++ + D ++++
Sbjct: 55 DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114
Query: 466 G 468
G
Sbjct: 115 G 115
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 33.1 bits (72), Expect = 0.25
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +1
Query: 238 GGPGNGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMI 414
G +GK + A + A GIT I + + S +T ID PGH F
Sbjct: 35 GHVDHGKTTLLDALRNSSVAAGEAGGITQHIGAFLVKLPSGEKITFIDTPGHAAFNSMRA 94
Query: 415 TGTSQADCAVLIVAAGTG 468
G + D VL+VAA G
Sbjct: 95 RGANVTDIVVLVVAADDG 112
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 313 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 459
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 202
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 358 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 468
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Frame = +1
Query: 286 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 426
DK +ERGIT+D+ F+ + +T++D PGH IK +I G
Sbjct: 65 DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122
Query: 427 QADCAVLIVAAGTGEFEAGISKNGQTR 507
A +I GT E G ++G+ +
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVK 143
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 289 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 456
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 370 IIDAPGHRDFIKNMITGTSQADCAVLIV 453
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 122 THINIVVIGHVDSGKSTTTGHLIY 193
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
Length = 228
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 125 HINIVVIGHVDSGKSTTTGHLIY---KCGGIDKRTIEKFEKEAQEMVKDPSNML 277
H+ VIGH+ ST GHLI C + + + + F+++ + K +N+L
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLIVIDGDCHSLTEISNQGFDRKTNLLCKLGTNIL 222
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 280 VLDKLKAERERGITI 324
VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 131 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 229
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 7.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 690 WHGDNMLEPSTKMPWFKGWQVERKE 764
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 440
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 495 RSNPWHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAF 674
R +P H A + + + + K+ + + EE+ E+ + + G +PA V
Sbjct: 194 RQSPLHGDHAIQKATQSVAIPIPKITRSSEGHQRRSLEELNTEIQKLVLRPGDDPAEVKL 253
Query: 675 V-PISG 689
+ P+ G
Sbjct: 254 IEPVDG 259
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 573 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 713
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 746 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 636
P+LEP + G L + S S GH+ D+ ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414
>SB_36443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 353 LVSNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPFPGPPSRTSRWY 216
++ N+ RAI + L T Y +DPL P RT R+Y
Sbjct: 28 MIDNYSRAIDLFRRFDVDETPLLGTPPYYRDPLIRDTPLLRTPRYY 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,031,470
Number of Sequences: 59808
Number of extensions: 523965
Number of successful extensions: 1554
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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