Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00285
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   182   4e-48
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   178   5e-47
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   176   2e-46
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   176   2e-46
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    33   0.003
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.5  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  182 bits (442), Expect = 4e-48
 Identities = 85/85 (100%), Positives = 85/85 (100%)
 Frame = +1

Query: 253 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
           GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA
Sbjct: 50  GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 109

Query: 433 DCAVLIVAAGTGEFEAGISKNGQTR 507
           DCAVLIVAAGTGEFEAGISKNGQTR
Sbjct: 110 DCAVLIVAAGTGEFEAGISKNGQTR 134



 Score =  176 bits (429), Expect = 2e-46
 Identities = 81/85 (95%), Positives = 82/85 (96%)
 Frame = +3

Query: 510 HALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 689
           HALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISG
Sbjct: 136 HALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 195

Query: 690 WHGDNMLEPSTKMPWFKGWQVERKE 764
           WHGDNMLE S+KMPWFKGW VERKE
Sbjct: 196 WHGDNMLEVSSKMPWFKGWTVERKE 220



 Score =  105 bits (253), Expect = 3e-25
 Identities = 49/51 (96%), Positives = 49/51 (96%)
 Frame = +2

Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMVK 259
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM K
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  178 bits (433), Expect = 5e-47
 Identities = 83/85 (97%), Positives = 84/85 (98%)
 Frame = +1

Query: 253 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 432
           GKGSFKYAWVLDKLKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQA
Sbjct: 50  GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQA 109

Query: 433 DCAVLIVAAGTGEFEAGISKNGQTR 507
           DCAVLIVAAG GEFEAGISKNGQTR
Sbjct: 110 DCAVLIVAAGIGEFEAGISKNGQTR 134



 Score =  167 bits (407), Expect = 7e-44
 Identities = 75/85 (88%), Positives = 80/85 (94%)
 Frame = +3

Query: 510 HALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 689
           HALLAFTLGVKQLIVGVNKMD T+PPYSE RFEEIKKEVSSYIKKIGYN A+VAFVPISG
Sbjct: 136 HALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISG 195

Query: 690 WHGDNMLEPSTKMPWFKGWQVERKE 764
           WHGDNMLEPS K PW+KGW+VERK+
Sbjct: 196 WHGDNMLEPSPKTPWYKGWKVERKD 220



 Score =  105 bits (253), Expect = 3e-25
 Identities = 49/51 (96%), Positives = 49/51 (96%)
 Frame = +2

Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMVK 259
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM K
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  176 bits (429), Expect = 2e-46
 Identities = 81/85 (95%), Positives = 82/85 (96%)
 Frame = +3

Query: 510 HALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 689
           HALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISG
Sbjct: 63  HALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 122

Query: 690 WHGDNMLEPSTKMPWFKGWQVERKE 764
           WHGDNMLE S+KMPWFKGW VERKE
Sbjct: 123 WHGDNMLEVSSKMPWFKGWTVERKE 147



 Score =  131 bits (317), Expect = 6e-33
 Identities = 61/61 (100%), Positives = 61/61 (100%)
 Frame = +1

Query: 325 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 504
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 505 R 507
           R
Sbjct: 61  R 61


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  176 bits (429), Expect = 2e-46
 Identities = 81/85 (95%), Positives = 82/85 (96%)
 Frame = +3

Query: 510 HALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 689
           HALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISG
Sbjct: 79  HALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 138

Query: 690 WHGDNMLEPSTKMPWFKGWQVERKE 764
           WHGDNMLE S+KMPWFKGW VERKE
Sbjct: 139 WHGDNMLEVSSKMPWFKGWTVERKE 163



 Score =  164 bits (399), Expect = 7e-43
 Identities = 77/77 (100%), Positives = 77/77 (100%)
 Frame = +1

Query: 277 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 456
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 457 AGTGEFEAGISKNGQTR 507
           AGTGEFEAGISKNGQTR
Sbjct: 61  AGTGEFEAGISKNGQTR 77


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 364 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 468
           VT +D PGH  FI     G    D  VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229



 Score = 25.4 bits (53), Expect = 0.58
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 119 KTHINIVVIGHVDSGKST 172
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 128 INIVVIGHVDSGKST 172
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 349 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 450
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 349 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 450
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 725 FG*RLQHVVSVPSRNGHESDSSWV 654
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 568 WIPLNHHTVSPDLRKSRRKY 627
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,072
Number of Sequences: 438
Number of extensions: 4687
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)