Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00284
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 31 0.22
SPAC5H10.09c |||3-methyl-2-oxobutanoatehydroxymethyltransferase|... 28 1.5
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 26 4.7
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 26 6.1
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 6.1
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 26 6.1
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 25 8.1
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.1
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 25 8.1
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 30.7 bits (66), Expect = 0.22
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 671 MTNSTIGYP*VVPLGMSMC*GHPQPQKSNSADSGDPGLPGLSA 543
M N + P +VP GM++ G P P A PG+PG +A
Sbjct: 514 MPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATA 556
>SPAC5H10.09c
|||3-methyl-2-
oxobutanoatehydroxymethyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 260 GDKVQATSQVHSTQLPESIQHVR-SSFTIETNGPNPDVGEDQPIIA 126
GD + T+Q HST LP S++ + + ++ PN + D P ++
Sbjct: 46 GDSLGMTAQGHSTTLPVSVEDIAYHTKSVRRGAPNRLLMADLPFMS 91
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -1
Query: 227 STQLPESIQHVRSSFTIETNGPNPDVGEDQPIIAIRCKFVLVEVENRIYVS 75
+ +L S+ + F I +P + PI+ RC F V +R Y S
Sbjct: 530 AVELTRSMVEENTIFLISKYASSPSFFNEYPILKFRCDFENVRTMDRFYQS 580
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 179 W*RSS*HAEYFLGAEYCGLGSWLGLCPRGSVLARFTHLQHEDYSYVI 319
W + ++FL A G WL CP G++ + H Y YV+
Sbjct: 133 WINTDIVCKFFLEACETGKYGWLWQCPNGNMTCIYKHAL--PYGYVL 177
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 641 LKDILWCCSSWCPTGT 688
L D +WCCSS PT T
Sbjct: 149 LVDGIWCCSSDFPTAT 164
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 383 LDENKRPLNFDEQRKLMIELDKFSQ 457
LDEN P NF+E ++ I D+ S+
Sbjct: 213 LDENGNPANFNETEQITIVSDEKSE 237
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -1
Query: 314 HNCSLHAVDE*TWPEHCHGDKVQATSQVHSTQLPESIQHVRSSFTIETNGPNPDVGEDQ 138
H +L V+ T E +G +V H T +P R S IE GP+ DV E++
Sbjct: 84 HAFTLSKVEFTTAFERLNGKRVLFPMGFHCTGMPICASADRLSREIEMFGPSFDVPEEK 142
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 666 EQHHRISLSGSLGYEHVLRPPAAAEVKLGRLGRSRITWP 550
+ H L GSL + + +P +++L G+SR WP
Sbjct: 92 QSEHSAVLRGSLCIQ-IYKPVKLKKIQLSFKGKSRTEWP 129
>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 78 YIDSVFHLYKYKLTPYSDDRLIFPDIRVRSISLDGKGAPNMLNTFWELSTVD 233
Y+D FH Y ++ IFPD+ VR I N++ E S V+
Sbjct: 163 YVDG-FHSYMFQFVWNHQALAIFPDLSVRQIYKLPSPTANIVPLSQEFSQVN 213
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 392 NKRPLNFDEQRKLMIELDKFSQGLK 466
NK FD Q K+ +L+KF Q LK
Sbjct: 239 NKESSLFDSQEKIDSQLEKFLQPLK 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,564
Number of Sequences: 5004
Number of extensions: 67511
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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