Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00284
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378 33 0.23
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 31 0.91
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 30 2.1
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700... 30 2.1
04_04_1210 + 31761689-31762255,31762318-31762322,31763009-317631... 29 2.8
05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524 29 3.7
12_01_0670 + 5698852-5699061,5700894-5701316 28 6.4
11_06_0024 - 19331250-19331380,19331412-19331484,19331571-193317... 28 6.4
03_01_0353 + 2782125-2782550 28 6.4
07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896 28 8.5
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199... 28 8.5
04_03_0811 - 19909128-19912214 28 8.5
02_05_0551 + 29907768-29907909,29907995-29909280 28 8.5
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952... 28 8.5
>04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378
Length = 567
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 24 MGDLATTMRDPLFFRWHGYIDSVFHLYKYKLTPYSDD 134
MG + RDP+FF HG +D ++H+ + L P D
Sbjct: 338 MGIFYSAARDPVFFAHHGNVDRMWHIRRGLLFPGDTD 374
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 31.1 bits (67), Expect = 0.91
Identities = 20/45 (44%), Positives = 21/45 (46%)
Frame = +1
Query: 454 TGLEARQQYSTSSQCGLLMTVPFERTFSNQADRPGNPGSPESAEF 588
T LEA QY TS Q LL +P RT A PG S EF
Sbjct: 681 TMLEATLQYQTSQQKALLSPLPSPRTSMIDAS-PGRANHDSSQEF 724
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 573 GRSRITW-PVSLVAECPLKRNGHEESTLRRRTVLLPG 466
GR TW P+ + +CPLK + RR+ + LPG
Sbjct: 444 GREEDTWEPIENLRDCPLKIKEFVQEGYRRKILPLPG 480
>03_03_0090 +
14367033-14367279,14367402-14368205,14368314-14370039,
14370135-14370219,14370398-14370457,14370744-14370836
Length = 1004
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 263 HGDKVQATSQVHSTQLPESIQHVRSSFTIETNGPNPDVGEDQP 135
+G A Q HS+ LPE + + S +N N DVG P
Sbjct: 645 NGQNSPACQQAHSSLLPEIHKSIPPSAAGHSNSVNSDVGSSYP 687
>04_04_1210 +
31761689-31762255,31762318-31762322,31763009-31763146,
31774759-31775368
Length = 439
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 24 MGDLATTMRDPLFFRWHGYIDSVFHLYKYKLTPYSDD 134
MG + RDP+FF HG +D ++++ ++ L P D
Sbjct: 283 MGMFYSAARDPVFFAHHGNVDRMWYI-RHGLFPRDTD 318
>05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524
Length = 427
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 302 LHAVDE*TWPEHCHGDKVQATS--QVHSTQLPESIQHVRSSFTIE 174
+H V+E WP+ HG +AT+ Q S L + + S F +E
Sbjct: 346 VHLVEELKWPDLLHGTFAEATTAMQNQSQSLYDDVIKAESQFNME 390
>12_01_0670 + 5698852-5699061,5700894-5701316
Length = 210
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2
Query: 530 HSATRLTGQVIRDLPSLPSLTSAAAG 607
HSA RL G+ R LPS +SAAAG
Sbjct: 33 HSANRLAGKHTRVALLLPSSSSAAAG 58
>11_06_0024 -
19331250-19331380,19331412-19331484,19331571-19331768,
19333317-19333484,19334187-19334263,19335321-19335423
Length = 249
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +2
Query: 281 FTHLQH--EDYSYV--IEVNNTGRSSVMGMFRIFIAPTLDENKRPLNFDEQRKLMIELDK 448
+ HLQH V I+ N G + F+I + +D++ + D + KL+ + DK
Sbjct: 139 YEHLQHLGRHLKNVSGIDYENWGTVKLATAFKIICSRKIDKSDEMFSDDVRSKLLDDADK 198
Query: 449 FSQ-GLKPGNNTVRRRSVD 502
+ + G N +R VD
Sbjct: 199 YKDLVFRTGLNILRNDKVD 217
>03_01_0353 + 2782125-2782550
Length = 141
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = -3
Query: 684 PVGHHDEQHHRISLSGSLGYEHVLRPPAAAEVKLGRLGRSRITWPVSLVAEC 529
P HH R++ +GS PPA + GR G R T V L EC
Sbjct: 72 PGDHHHGAASRMTSTGSSSSSFTTPPPANSSAAAGRGGSDRTTDKVEL--EC 121
>07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896
Length = 260
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +1
Query: 436 RTRQVLTGLEARQQYSTSSQCGLLMTVPFERTFSNQADRPGNPGSPESAEFDFCGCGWPQ 615
R Q+L G AR+Q S + + + + DRP +P A+ C
Sbjct: 110 RCAQML-GCTARKQVQQSDDDPSRLEITYIGLHTCGGDRPSSPAPTNPADGPRCDAATSS 168
Query: 616 HMLIPKGTTQ 645
H L+P Q
Sbjct: 169 HRLLPSALQQ 178
>04_03_0819 +
20018496-20019487,20019587-20019721,20019834-20019978,
20020135-20020416,20020649-20020910,20021028-20021224,
20021315-20021425,20022341-20022392,20022442-20022584,
20023121-20023210,20023300-20023800,20024108-20024176,
20024866-20025011,20025475-20025530,20026140-20026286,
20027405-20027530,20027608-20027876,20028026-20028127
Length = 1274
Score = 27.9 bits (59), Expect = 8.5
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Frame = -3
Query: 684 PVGHHDEQHHRISLSGSLGYEHV-LRPPAAAEVKLGR------LGRSRITWPVSLVAECP 526
P HD+ HH + G LGY H+ L PAA + L R L SR P + P
Sbjct: 7 PENRHDD-HHPSTSGGGLGYFHLRLLCPAAPLLLLLRSDRLYSLSLSRRRGPRLRLLASP 65
Query: 525 LKRNGHEESTLRRRTVLL 472
+R+G RRR +LL
Sbjct: 66 RRRHGR-----RRRALLL 78
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -1
Query: 221 QLPESIQHVRSSFTIETNGPNPDVGEDQPIIAIRCKFVLVEVENRIYVSMP 69
+LP SI + S T+E +G D I ++ +L +EN++ VS+P
Sbjct: 445 ELPRSISALSSLLTLEISGTKLTSLPDWMFIEMQQLQLLKLIENKLLVSVP 495
>02_05_0551 + 29907768-29907909,29907995-29909280
Length = 475
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 548 TGQVIRDLP--SLPSLTSAAAGGLSTCSYPREPLKDILWCCSSWCPTGTMT 694
TG V+ LP + +L SA ++ YP P IL C + GT+T
Sbjct: 360 TGTVVTRLPPTAYSALRSAFRAAMAPYGYPSAPATGILDTCYDFTRYGTVT 410
>02_02_0372 +
9522751-9522964,9523043-9523255,9523471-9523555,
9524373-9524448,9524974-9525150,9525473-9525566,
9526357-9526466,9526568-9526657,9526752-9526832,
9528468-9529277,9530777-9530896
Length = 689
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 521 LRGHSATRLTGQVIRDLPSLPSLTSAAAGGLSTCSYPREPLKDILWCCS 667
LRG SA L IR +P +L+ A G C+ PR +L CCS
Sbjct: 362 LRGRSAQLLI-DYIRTIPCKAALSVA---GCYLCAVPRSKGTKVLVCCS 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,471,333
Number of Sequences: 37544
Number of extensions: 510932
Number of successful extensions: 1658
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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