Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00284
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               30   2.1  
SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               30   2.1  
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)           29   2.8  
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)                     28   6.5  
SB_5021| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  

>SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1400

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -3

Query: 531 CPLKRNGHEESTL---RRRTVLLPGFKPCEN-LSSSIMSFRCSSKFRGR 397
           C  K + H  +T+   + R  ++   + C N LSSS +SF+C+SKFR R
Sbjct: 388 CKGKHSTHNCATVSDPKARKDIVVKLRLCYNCLSSSHISFKCTSKFRCR 436


>SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1378

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -3

Query: 531 CPLKRNGHEESTL---RRRTVLLPGFKPCEN-LSSSIMSFRCSSKFRGR 397
           C  K + H  +T+   + R  ++   + C N LSSS +SF+C+SKFR R
Sbjct: 367 CKGKHSTHNCATVSDPKARKDIVVKLRLCYNCLSSSHISFKCTSKFRCR 415


>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 212 LGAEYCGLGSWLGLCPRGSVLARFTHLQHEDYSYVIEVNNTGR 340
           L A   G    +G C  G VLA   + +H DY YV+   N  +
Sbjct: 21  LRAVLVGATGSIGECLLGEVLASKNNFRHIDYDYVVNCANVAK 63


>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
          Length = 334

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 197 VRSSFTIETNG-PNPDVGEDQPIIAIRCKFVLVEVENRIYVS 75
           VR    +ET G P PDV     I  + C++ +V+ E RI V+
Sbjct: 255 VREVSAVETQGNPFPDVYHFDTIREVNCRYNVVDKETRIKVT 296


>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 347

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 711 QVLLHPVIVPVGHHDEQHHRISLSGSLGYEHVLRPPAAAEVK 586
           +++LHP   P  +HD     I L+  L Y   +RP     +K
Sbjct: 184 RIILHPKYAPHNNHDYDVALIKLASPLQYNDRVRPVCLPSLK 225


>SB_5021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 608 HPQPQKSNSADSGDPGLPGLSAWLLNVLS 522
           H  PQ  NS DS  P L G    LLN++S
Sbjct: 140 HLNPQGINSTDSIVPNLRGFKMALLNIVS 168


>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 468  GFKPCENLSSSIMSFRCSSKFRGRLFSSSVGAMNILNMPMTLL 340
            GF+ C +L    +   C SKF G + +  +  +N+ +  +T+L
Sbjct: 1067 GFESCSSLEELSLEGNCISKFEGLVRNPKLKWLNLSSNNLTIL 1109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,148,453
Number of Sequences: 59808
Number of extensions: 540394
Number of successful extensions: 1830
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)