Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00284
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24810.1 68417.m03554 ABC1 family protein contains Pfam domai...    30   1.3  
At1g17520.1 68414.m02153 DNA-binding protein, putative contains ...    29   2.3  
At5g61340.1 68418.m07697 expressed protein                             29   3.1  
At5g58880.1 68418.m07377 hypothetical protein                          29   3.1  
At1g74420.2 68414.m08622 xyloglucan fucosyltransferase, putative...    28   5.3  
At1g74420.1 68414.m08621 xyloglucan fucosyltransferase, putative...    28   5.3  
At1g67100.1 68414.m07633 LOB domain protein 40 / lateral organ b...    28   5.3  
At4g32730.2 68417.m05680 myb family transcription factor identic...    28   7.1  
At2g07772.1 68415.m00929 expressed protein                             28   7.1  
At1g51870.1 68414.m05847 protein kinase family protein contains ...    28   7.1  

>At4g24810.1 68417.m03554 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 438

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 28/104 (26%), Positives = 43/104 (41%)
 Frame = +2

Query: 197 HAEYFLGAEYCGLGSWLGLCPRGSVLARFTHLQHEDYSYVIEVNNTGRSSVMGMFRIFIA 376
           HA+   G    G GS + L   G V     HL+    + VI + +   S  +  FR    
Sbjct: 262 HADPHPGNILIGKGSEVALLDYGQVKELPDHLRLGYANLVIAIADNNASLALQSFRELGI 321

Query: 377 PTLDENKRPLNFDEQRKLMIELDKFSQGLKPGNNTVRRRSVDSS 508
            T+ + K     ++Q  L +    F   + PG  T++  S DSS
Sbjct: 322 ATVAKCKN----EQQELLQLAKTMFDTEMPPGTTTLQPFSEDSS 361


>At1g17520.1 68414.m02153 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 296

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 176 ETNGPNPDVGEDQPIIAIRCKFVLVEVENRIYVSMPAKEQ 57
           +TN   P + +     +I   + LVEVEN++ VS  A E+
Sbjct: 223 QTNSQGPSISQQIVEASITAAYKLVEVENKLDVSKGAAEE 262


>At5g61340.1 68418.m07697 expressed protein
          Length = 326

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 462 KPCENLSSSIMSFRCSSKFRGRLFSSSVGAMNILNMPMT-LLRPVLFT 322
           +P  + SSS +  R +  FRG  FSSS    NIL++ ++  L   LFT
Sbjct: 44  QPFFSSSSSTLHMRLNMLFRGAGFSSSHDFFNILSLKLSQTLSSSLFT 91


>At5g58880.1 68418.m07377 hypothetical protein
          Length = 1088

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 501 STLRRRTVLLPGFKPCENLSSSIMSFRCSSKFRGRLFSSSVGAMNILNMPMTLL 340
           S L RRT     F+   + SS +     S +F G LF +S    +I   P T+L
Sbjct: 593 SLLDRRTQSEEIFEQTPSSSSDVSKPTSSGRFEGMLFHTSASLSSITEEPETIL 646


>At1g74420.2 68414.m08622 xyloglucan fucosyltransferase, putative
           (FUT3) identical to SP|Q9CA71 Probable
           fucosyltransferase 3 (EC 2.4.1.-) (AtFUT3) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 525

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 563 GLPGLSAWLLNVLSNGTVMRSPHC 492
           GL GL  W+LN   NGT    P+C
Sbjct: 483 GLGGLKPWVLNKAENGTA-HEPYC 505


>At1g74420.1 68414.m08621 xyloglucan fucosyltransferase, putative
           (FUT3) identical to SP|Q9CA71 Probable
           fucosyltransferase 3 (EC 2.4.1.-) (AtFUT3) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 493

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 563 GLPGLSAWLLNVLSNGTVMRSPHC 492
           GL GL  W+LN   NGT    P+C
Sbjct: 451 GLGGLKPWVLNKAENGTA-HEPYC 473


>At1g67100.1 68414.m07633 LOB domain protein 40 / lateral organ
           boundaries domain protein 40 (LBD40) identical to
           SP|Q9ZW96 LOB domain protein 40 {Arabidopsis thaliana}
          Length = 233

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -3

Query: 462 KPCENLSSSIMSFRCSSKFRGRLFSSSVGAMNILNMPMTLLRPVLFTSIT*L*SSCCR*V 283
           +PC     S  S   ++ F  + +  + G MN+LN     LRP +F S+  L  +C R V
Sbjct: 22  RPCLQWIKSAESQANATVFLAKFYGRA-GLMNLLNTGPDHLRPAIFRSL--LYEACGRIV 78

Query: 282 N 280
           N
Sbjct: 79  N 79


>At4g32730.2 68417.m05680 myb family transcription factor identical to
            PC-MYB1 GI:5678826 from [Arabidopsis thaliana];
          Length = 995

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 547  DRPGNPGSPESAEFDFCGCGWPQHMLIPKGTTQGY 651
            D+ GN    E    DF  CG P    +P  +  GY
Sbjct: 949  DQLGNRSQVECRALDFSDCGTPGKAKVPSASPGGY 983


>At2g07772.1 68415.m00929 expressed protein
          Length = 179

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -3

Query: 594 EVKLGRLGRSRITWPVSLVAECPLKRNGHEESTLRRRTVLLPGFKPCENLSSSIMSFRC 418
           +V LG+LG      P    AE PL  +  E  +     +L+ GFKP +    S+   RC
Sbjct: 58  KVGLGKLGVGVSLVPKKDKAELPLLPSEVEYGSRFAEYLLIEGFKPLKRKDISLRLKRC 116


>At1g51870.1 68414.m05847 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 837

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/56 (21%), Positives = 25/56 (44%)
 Frame = +1

Query: 445 QVLTGLEARQQYSTSSQCGLLMTVPFERTFSNQADRPGNPGSPESAEFDFCGCGWP 612
           ++ TGLE  Q  +   +   +M +      S +    G+P +P+   ++   C +P
Sbjct: 351 EIYTGLEILQLQTDKDEVSAMMNIKTTYDLSKKISWQGDPCAPQLYRWEGLDCSYP 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,241,202
Number of Sequences: 28952
Number of extensions: 379024
Number of successful extensions: 1160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)