Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00283
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.24 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    29   0.98 
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    29   0.98 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.0  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   3.0  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    27   3.9  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.2  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   6.9  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    26   6.9  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    26   6.9  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    25   9.1  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +3

Query: 510 TSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGET--EKTTPATMSA 683
           TSS ++S A SNS +++   SSS N T   +    +++ST ++    T    TT AT ++
Sbjct: 209 TSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSAS 268

Query: 684 GNSS 695
             SS
Sbjct: 269 ATSS 272



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = +3

Query: 510 TSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSAGN 689
           TSS ++S A SNS +++   SSS N T   +    +L+ST  +    +     +++++  
Sbjct: 177 TSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTT 236

Query: 690 SS 695
           S+
Sbjct: 237 SA 238



 Score = 25.4 bits (53), Expect = 9.1
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
 Frame = +3

Query: 510 TSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA--*PGETEKTTPA--TM 677
           TSS + S + ++S   +  ++SS+  +  +++  L  +STT++      T  TT A  T 
Sbjct: 115 TSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTS 174

Query: 678 SAGNSSL 698
           SA +SSL
Sbjct: 175 SATSSSL 181


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = +2

Query: 158 EGYVVAYGYSENSDDIQNLERELAKTAYTMEPVRTARRLEDPD-GIQHEDGLCRRNVNQQ 334
           + Y++   +++  +DIQ+ E +L    YT+ P+ T +    P   +Q+E      N+  +
Sbjct: 416 DAYLMGDLFNQEEEDIQDTENDLLNANYTLLPLTTDKSGTRPSTTLQYELHKIGSNIKAE 475

Query: 335 ----PLVQLGY 355
               P+ ++GY
Sbjct: 476 FKTMPIGKIGY 486


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +2

Query: 155 SEGYVVAYGYSENSDDIQNLERELAKTAYTMEPVRTARRLEDPDGIQHEDGLCRRNVN-- 328
           SEG +  Y  +  S+ +++L   L +T  T     T +    P G+Q +       VN  
Sbjct: 671 SEGAIYLYYENRQSNTLKSLSSTLIRTFSTFHLATTFQDTNLPSGVQLQQKYVMSGVNEI 730

Query: 329 -QQPLVQLGY 355
            + P++ + Y
Sbjct: 731 FEPPIIHVSY 740


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 23/93 (24%), Positives = 49/93 (52%)
 Frame = +3

Query: 438 SRLVSQGIKNAMSFAYKLWHEGHKTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLT 617
           S +VS     + S +  L      TSS  ++ ++S+S S++   SSS++     S+    
Sbjct: 213 SSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSI 272

Query: 618 LASTTTA*PGETEKTTPATMSAGNSSLFGKTTT 716
           ++S++++    +  +T +T+S+ +SS    T+T
Sbjct: 273 ISSSSSS--SSSPTSTSSTISSSSSSSSSPTST 303


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 608  DANVGEYNDRLTWGDGKDYTSHHVSWQLISLWEDNNVIFKILNTE 742
            D  + E N+R+  G  KD   + +S   ++  +D N  FK++N E
Sbjct: 929  DIYIDESNERVVKGKSKDNFEYFLSGNTVTRKKD-NACFKMMNFE 972


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
 Frame = +3

Query: 249 SRYELPADLKTQTAFSTKMVFADATSINNHLYNLVTGGDYINAVKTVRS-LVDNQG---- 413
           S+  L   L    A     V   + S+ N  Y+++     +N  K +RS ++D       
Sbjct: 44  SKKTLRESLSCVLALPLDHVTGSSESMENWFYSILG----LNDEKIIRSAMIDLDRLYTT 99

Query: 414 SDVCRDVVSRLVSQGIKNAMSF---AYKLWHEGHKTSSKITSRANSNSYSTN 560
           +  C D++S  +S    +A+     A+ LW EG KTS+ +     + +Y  +
Sbjct: 100 NPACPDLISAFLSFRGFHALQLYRIAHGLWSEGDKTSAVLVQNWTAVAYGVD 151


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/62 (32%), Positives = 37/62 (59%)
 Frame = +3

Query: 510 TSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSAGN 689
           TSS  +S ++S+S S++   SSS++     S+++ T++S+T      T   TP++ S+  
Sbjct: 211 TSSTSSSHSSSSSSSSS---SSSSSRPSSSSSFITTMSSSTFI---STVTVTPSSSSSST 264

Query: 690 SS 695
           SS
Sbjct: 265 SS 266


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 709 VFPKRDELPADMVAGVVFSVSPG-QAVVVLANVS 611
           + P   ++PAD+ A +  S  PG + VVV  N++
Sbjct: 735 ILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIA 768


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 74  DSVKTVTISTGPITKRCAADVARIVNASEGYVVAYGYSENSDDIQNL 214
           DS +  T   G I      +V RI+N      +AYG    SD  +N+
Sbjct: 154 DSQRAATKDAGAIA---GLNVLRIINEPTAAAIAYGLDAKSDKPKNV 197


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +3

Query: 75  TASKLLPSARGRSLSGALQTSPGLSTRPKATSLHTDILKILTTFKISSVSWQKRLILW 248
           +A+K   S RG  +   L T  G + RPK       +L  +     +  +WQ +   W
Sbjct: 6   SATKFTFSKRGPCVFRYLSTLEGTTVRPKKNKFLVGLLSAVPIVTFALGTWQVKRREW 63


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 9/222 (4%)
 Frame = +3

Query: 6   SKYPTGSPSCLWTTATLPVTSETTASKLLPSA----RGRSLSGALQTSPGLSTRPKATSL 173
           S  P+ S S L +++   ++S +++S L  S+       S   +L +S    +   + SL
Sbjct: 39  SVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASL 98

Query: 174 HTDILKILTTFKISSV--SWQKRLILWSRYELPADLKTQTAFSTKMVFADA---TSINNH 338
            +     LT+   +S   S     +  S   L A   +    S+ +  + +   +S + H
Sbjct: 99  TSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVPSSSSSYH 158

Query: 339 LYNLVTGGDYINAVKTVRSLVDNQGSDVCRDVVSRLVSQGIKNAMSFAYKLWHEGHKTSS 518
             ++ T G  +++  ++ S     G  +   V +  VS+ +    +     W+     +S
Sbjct: 159 SSSMTTSG--LSSSASIVSSTYRDGPSIITLVSTSYVSEVVTPTTT---NNWNSSSSFTS 213

Query: 519 KITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*P 644
             +S   S+SYS++  L S +N   K SN +  +   + A P
Sbjct: 214 STSSTPISSSYSSSGTLPSKSN---KSSNHVGVVVGCSVAIP 252


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 378 VKTVRSLVDNQGSDVCRDVVSRLVSQGIKNAMSFAYKLWH 497
           +K  R  ++++ SD+C DV+S L    I  A +   K+++
Sbjct: 83  IKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFY 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,376
Number of Sequences: 5004
Number of extensions: 52286
Number of successful extensions: 203
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)