Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00283
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 31 0.78
SB_48894| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94) 30 1.8
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53) 29 5.5
SB_5422| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 28 9.6
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 31.5 bits (68), Expect = 0.78
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +3
Query: 327 INNHLYNLVTG-GDYINAVKTVRSLVDNQGSDVCRDVVSRLVSQGIKNAMSFAYKLWHEG 503
I + +++ VTG + + V + N S+ + S S N+ S + +
Sbjct: 328 IESEMHDSVTGMRNRVRRDTVVDGSMFNSNSNSNSNSNSTSNSNSNNNSNSNSNNNSNNN 387
Query: 504 HKTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSA 683
+ +S S +NSNS S + S+S + + SN +T A+TTT T T AT +A
Sbjct: 388 NNNNSNSNSNSNSNSNSNSNSNSNSNSNSNSNSNSTVT-ATTTTTVTVTTTATATATATA 446
Query: 684 GNSSLFGKTTT 716
++ TTT
Sbjct: 447 TATATATVTTT 457
>SB_48894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 756 KYISYSVFSILNITLLSSQREMSCQLTWWLV*SFPSP 646
+YI + + ++ +S + CQ+ WWL +PSP
Sbjct: 36 QYIGLQLLASSGVSSRASDIHIGCQIVWWLDDRYPSP 72
>SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = +3
Query: 510 TSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSAGN 689
TS+ TS S + ST S++ + T +N T STTT+ T TT T S N
Sbjct: 21 TSTTNTSTTTSTTTSTTN-TSTTTSTTTSTTNTSTT-TSTTTS-TTNTSTTTSTTTSTTN 77
Query: 690 SSLFGKTTT 716
+S TTT
Sbjct: 78 TSTTTSTTT 86
>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
Length = 592
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = +1
Query: 472 CRSRT-SCGTRATRHRRRLLPERIPTH-TRPTDN*AHRQTLQSSSQTGC*RWRVQRPPDL 645
CR RT R R RR I + TR T R +SS R+R ++
Sbjct: 419 CRYRTRQVSQRGKRERRHHPGVAICRYRTRQTGESTRRTRKMTSSGVAICRYRTRQVSQR 478
Query: 646 GRRKRLHQPPCQLATHLSLGRQQRDIQD 729
G R+R H P + + + QR +++
Sbjct: 479 GERERRHHPGVAICRYRTRQVSQRGVRE 506
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 42 TTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTRPKATS 170
TTA+L T+ ETT + L +A + + + T+P +T P+AT+
Sbjct: 722 TTASLATTAPETTTASLATTAPETTTASLVTTAPEATTAPEATT 765
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 42 TTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTRPKATS 170
TTA+L T+ ETT + L +A + + L T+P +T P+ T+
Sbjct: 67 TTASLVTTAPETTTASLATTAPETTTASFLTTAPEATTAPETTT 110
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 42 TTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTRPKATS 170
TTA+L T+ E T + L+ +A + + + T+P +T P+AT+
Sbjct: 247 TTASLATTAPEATTASLVTTAPETTTASLVTTAPEATTAPEATT 290
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 42 TTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTRPKATS 170
TTA+L T+ E T + LL +A + + T+P +T P+AT+
Sbjct: 662 TTASLVTTAPEATTASLLTTAPETTTASLATTAPEATTAPEATT 705
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 42 TTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTRPKATS 170
TTA+L T+ ETT + L+ +A + + T+P +T P+ T+
Sbjct: 542 TTASLATTAPETTTASLVTTAPEATTASLATTAPEATTAPETTT 585
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 42 TTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTRPKAT--SLHTDILKILTTFKI 212
TTA+L T+ ETT + L +A + + T+ ++T P+AT SL T L + T +
Sbjct: 79 TTASLATTAPETTTASFLTTAPEATTAPETTTASLVTTAPEATTASLATTALLVTTAPEA 138
Query: 213 SSVS 224
++ S
Sbjct: 139 TTAS 142
>SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)
Length = 291
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +3
Query: 504 HKTSSKITSRANSNSYSTNR*LSSSANITIKLSNWML 614
H T+ T++ ++ Y+T + +++ + T+K +NW+L
Sbjct: 250 HSTTQHSTTQYSTTQYNTTQHVTTRSASTVKHNNWLL 286
>SB_5422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -1
Query: 536 RSGSNLRRC-LVALV---PQLVRERHGVLDALRDEPRDDVATDVGALVVD 399
RSG LRR ++ALV QL+ E VL L P DVA D GA VD
Sbjct: 21 RSGKTLRRSNVIALVVQAQQLITENKLVLSDLERNPELDVAID-GADEVD 69
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.3 bits (60), Expect = 7.3
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +3
Query: 510 TSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETE---KTTPATMS 680
T + T+ N+ + S N +++ N T N T + TT P T TT T +
Sbjct: 138 TPNTTTTTPNTTTTSPNA-TTTTPNTTTTTPNTTTTTPTATTTTPTATTTTPNTTTNTPN 196
Query: 681 AGNSSLFGKTTT*YSRY*TPNTRCT 755
A ++ TTT + TPNT T
Sbjct: 197 ATTTTPTATTTTPNATTTTPNTTTT 221
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 45 TATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKATS--LHTDILKILTTFKISS 218
++TL + TT++ + P++ S T PG ST+P TS +D LK+ + SS
Sbjct: 800 SSTLTSSISTTSTGMPPASL--STPTPFFTHPGFSTKPVTTSPTSLSDQLKLFASSSTSS 857
Query: 219 VS 224
VS
Sbjct: 858 VS 859
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 110 ITKRCAADVARIVNASEGY-VVAYGYSENSDDIQNLERELAKTAYTMEPVRTARRLEDPD 286
+ K+CA A I N + V A S +D++ L+ AKT + R A R+E D
Sbjct: 1841 LEKKCAELSAEIQNLQQSRDVTAADKSRINDEVCQLKLTNAKTEADLAETRNALRIEKQD 1900
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,039,652
Number of Sequences: 59808
Number of extensions: 422045
Number of successful extensions: 1484
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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