Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00283
(773 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 35 0.056
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 31 0.91
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 2.1
AL110471-3|CAB63308.1| 818|Caenorhabditis elegans Hypothetical ... 29 3.7
AL034364-6|CAA22254.2| 818|Caenorhabditis elegans Hypothetical ... 29 3.7
CU457740-8|CAM36338.1| 362|Caenorhabditis elegans Hypothetical ... 29 4.9
AC024776-3|AAK68466.1| 453|Caenorhabditis elegans Hypothetical ... 28 6.4
U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical pr... 28 8.5
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 35.1 bits (77), Expect = 0.056
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Frame = +3
Query: 9 KYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKATSLHTDIL 188
+Y T SP+ TT+T P T+ +T P++ + A P +T+P TS T +
Sbjct: 201 RYATFSPNIPMTTSTTPTTTTST----FPTSTTEKSTTA---QPSTTTKPTTTSPPTTQV 253
Query: 189 K-ILTTFKISSVSWQKRLILWSRYELPADLKTQTAF-STKMVFADATSINNHLYNLVT 356
K IL + + + + +W P +Q ST+ ++ I N+++ VT
Sbjct: 254 KTILPATEAQKIFTKPQYQIWPTTTRPMTSTSQAVISSTEQFIRPSSIIRNNVWKKVT 311
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 31.1 bits (67), Expect = 0.91
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 492 WHEGHKTSSKITSRANSNSYSTNR*LSSSA-NITIKLSNWMLTLASTTTA*PGETEKTTP 668
W+EG + ++ +S S+S +IT + T+ STTTA P T TP
Sbjct: 123 WYEGQRGRFFCRNKCDSGLEQDGSATSTSTTSITTSTLSPPSTVQSTTTAKPTTTSTITP 182
Query: 669 ATMSAGNSSLFGKTT 713
T + S++ TT
Sbjct: 183 TTSADPTSTITTSTT 197
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.9 bits (64), Expect = 2.1
Identities = 57/234 (24%), Positives = 90/234 (38%), Gaps = 3/234 (1%)
Frame = +3
Query: 24 SPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQ--TSPGLSTRP-KATSLHTDILKI 194
SPS T++ P +S TT + + PS S G+ Q TSP +ST TS + +
Sbjct: 1101 SPSTSGATSS-PGSSGTTLTSISPSPSQSSTIGSSQGSTSPVVSTTSGDMTSQGSTQIPG 1159
Query: 195 LTTFKISSVSWQKRLILWSRYELPADLKTQTAFSTKMVFADATSINNHLYNLVTGGDYIN 374
T ++ S S E+ + TQT S+ ++ + + G +
Sbjct: 1160 STGSTVTQPSTGSGSTSTSG-EITSQGSTQTPRSSLSTSPAISTSTQQSVSTNSPGSTVT 1218
Query: 375 AVKTVRSLVDNQGSDVCRDVVSRLVSQGIKNAMSFAYKLWHEGHKTSSKITSRANSNSYS 554
TVR + GS V + G +A S + TS + +S
Sbjct: 1219 QPSTVRGSTSS-GSTVTTGSTEGSSTSGSSSATSLSSS--SPVPSTSQSPNPSTSGSSTP 1275
Query: 555 TNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSAGNSSLFGKTTT 716
T S++ + + M + ST T + T P+T+S NSS G T T
Sbjct: 1276 TPNPSQSTSPVVSTTTGEMTSHGSTQTPSTIGSTVTQPSTVSGSNSS--GSTVT 1327
>AL110471-3|CAB63308.1| 818|Caenorhabditis elegans Hypothetical
protein W06D4.6 protein.
Length = 818
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 458 HQERHVVRVQAVARGPQDIVEDYFPSE 538
HQ+ H V V+ V +++ EDY PSE
Sbjct: 786 HQKSHNVEVKKVQEKVEEVDEDYVPSE 812
>AL034364-6|CAA22254.2| 818|Caenorhabditis elegans Hypothetical
protein W06D4.6 protein.
Length = 818
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 458 HQERHVVRVQAVARGPQDIVEDYFPSE 538
HQ+ H V V+ V +++ EDY PSE
Sbjct: 786 HQKSHNVEVKKVQEKVEEVDEDYVPSE 812
>CU457740-8|CAM36338.1| 362|Caenorhabditis elegans Hypothetical
protein C50E10.8 protein.
Length = 362
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 358 PVTKLYKWLLIDVASAKTIFVLNAVW-VFKSAGSSYRLHSISRFCQLTLEILNVVRIFRI 182
PVT+ W DVA + +++ W +F ++ SI C +TL I V F I
Sbjct: 97 PVTRGLPWWTCDVAKMARLDSISSAWPLFLGGALTWYYMSILTTCLITLSIERVCASFFI 156
>AC024776-3|AAK68466.1| 453|Caenorhabditis elegans Hypothetical
protein Y41D4B.16 protein.
Length = 453
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 15 PTGSPSCLWTTATLP--VTSETTASKLLPSARGRSLSGALQTSPGLSTRPKATSLHTDIL 188
PT + + L +TA+ P ++ T+A+ P+ + + + T+P ++RP S T
Sbjct: 365 PTTTSAALSSTASTPSIASTATSAATNPPTTTAGASTNSPATNPPTTSRPITASQSTTSQ 424
Query: 189 KILTTFKI 212
+ TT K+
Sbjct: 425 NVETTTKL 432
>U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical
protein C30G12.1 protein.
Length = 469
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +3
Query: 507 KTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSAG 686
KT+ +IT+ + + T+ + ++ ++S + STTT P + TPATM +
Sbjct: 288 KTNPQITTTTMTTTTRTSTAIPTTTTTPRQISLQTIPF-STTTRQPNFDKTKTPATMPSA 346
Query: 687 NSSLFGKTTT 716
+SS T
Sbjct: 347 SSSSLSSIQT 356
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,802,874
Number of Sequences: 27780
Number of extensions: 305199
Number of successful extensions: 1209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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